Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2151 ATGGAAAGCCATAATAGCAGTATTGAATGCCGGTGGAGAGCTGAAGAAGTCATTGGTGGGAACGCGAAAGCTCTTCAAGCTCTCAGGGAACTCATCATATTCCCGCTTCTCTACTCTCACCAAGCTAAGAAGCTCGGTGTCAAATGGCCGCAAGGTTTGCTTCTGTATGGTCCTCCAGGCACTGGAAAGACAAGTCTAGTACGGGCAGTTGTTCAGGAATGTGGAGCACATTTGACAGTTATCAGTCCTCATTCTGTCCATAAAGCACATGCTGGGGAAAGTGAGAGAATTCTTCGCGAGGCCTTTTCAGAGGCATCATCTCATTCAAATTGTGGCAAGCCATCGGTTATCTTTATAGATGAAATAGATGTACTCTGTCCTCACCGTAATTCCAGAAGGGAGCAAGATGTTCGAATTGCTTCCCAACTCTTTACATTGATGGATTCGAATAAGCCATCCTCAGCTATGCCAAGAGTTGTTGTGGTTGCATCAACTAACAGAGTGAATGCAATTGACCCTGCCCTTAGAAGGTATGGACGTTTTGATGCCGAAATTGAAGTTACTGCCCCAAATGAAGAGGAGCGCTTTCAAATTCTCAAGCTTTATACAAAGAAGATTCCCTTGGATCCTGGTGTTGACTTAAAAATGATTGCTGCATCTTGCAATGGATATGTTGGGGCTGATTTGGAGGCTTTGTGCCGTGAGGCTACTATATTAGCAGCTAAAAGGTTCAAAAGTGAAAATGAAAATGCTAGTAATTTAAACATAATGATGGAAGATTGGAACAATGCCAGAGCTATGGTTGGTCCCAGCATTACAAGAGGTGTTACAGTGGAAATTCCTAAAGTGACTTGGGAGGATATTGGGGGATTAAAAGAATTGAAGAAAAAGCTCCAGCAAGCTGTTGAATGGCCTATCAAGCATTCAGAAGCATTTTCAAGATTAGGCATTTCTCCTGTACGTGGGATTCTTTTGCATGGGCCTCCAGGATGTTCCAAAACAACGCTTGCAAAAGCTGTTGCAAATGCTGCCCAAGCTTCTTTCTTTTCCTTGAGTGGTGCAGAAATGTATTCGATGTATGTTGGAGAGGGGGAAGCATTGCTCCGTAACACATTTCAGAGAGCACGCCTGGCAGCACCAAGCATAATATTTTTCGATGAGGCTGATGTGGTAGCTGCCAAGCGGGGTGATTTTTCAAGCAATAGCAGTACAGTTGGAGAAAGGCTTTTGTCGACTCTTCTGACTGAGATGGATGGTTTAGAGGAAGCTACTGGAATTCTTGTTTTGGCGGCTACGAATCGCCCTTATGCAATAGATGCTGCCCTTATGCGCCCTGGACGTTTTGATCTGGTGCTGTATGTTCCCCCACCTGATTCAGAAGCTCGATATGAAATACTGTGTGTCCATACACGTGGCATGAAACTAGGGAGTGATGTCAATCTCAGAAGACTAGCAGATGATACCGAGTTTTTCACAGGCGCTGAACTTGAGGGTTTATGCAAGGAAGCTGGAATTGTTGCTCTGAGAGAAAATATCTCTGCTACTGCCGTGTGTGATCGCCATTTCCAGGTGGTGAGGAATTCTGTAAATCCAGCATTAACAAAAGAAGAAATTGATTCTTACTCATCTTTCATGAAGACCTCATCATCAGCATTTTCTAGGCATTTCAAATCAAGTTCAAAACTTGATAATAAGAGAAGTAATATCTTAGGTTCCATGGCTAAACTAGGTATTGTCGGCTGTCTGCTACTTGCTGCTACTAAATACTTTTTCATGCATGAAGAACAATCTGTATATGAAGTAGCTATCACCTGA 1815 0.4325 MESHNSSIECRWRAEEVIGGNAKALQALRELIIFPLLYSHQAKKLGVKWPQGLLLYGPPGTGKTSLVRAVVQECGAHLTVISPHSVHKAHAGESERILREAFSEASSHSNCGKPSVIFIDEIDVLCPHRNSRREQDVRIASQLFTLMDSNKPSSAMPRVVVVASTNRVNAIDPALRRYGRFDAEIEVTAPNEEERFQILKLYTKKIPLDPGVDLKMIAASCNGYVGADLEALCREATILAAKRFKSENENASNLNIMMEDWNNARAMVGPSITRGVTVEIPKVTWEDIGGLKELKKKLQQAVEWPIKHSEAFSRLGISPVRGILLHGPPGCSKTTLAKAVANAAQASFFSLSGAEMYSMYVGEGEALLRNTFQRARLAAPSIIFFDEADVVAAKRGDFSSNSSTVGERLLSTLLTEMDGLEEATGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDSEARYEILCVHTRGMKLGSDVNLRRLADDTEFFTGAELEGLCKEAGIVALRENISATAVCDRHFQVVRNSVNPALTKEEIDSYSSFMKTSSSAFSRHFKSSSKLDNKRSNILGSMAKLGIVGCLLLAATKYFFMHEEQSVYEVAIT 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2151 604 Gene3D - 273 457 IPR027417 -
Prci10g2151 604 ProSitePatterns AAA-protein family signature. 426 444 IPR003960 GO:0005524|GO:0016887
Prci10g2151 604 Gene3D - 458 549 - -
Prci10g2151 604 Pfam ATPase family associated with various cellular activities (AAA) 53 187 IPR003959 GO:0005524|GO:0016887
Prci10g2151 604 Pfam ATPase family associated with various cellular activities (AAA) 323 455 IPR003959 GO:0005524|GO:0016887
Prci10g2151 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 281 542 IPR027417 -
Prci10g2151 604 CDD RecA-like_CDC48_r2-like 294 454 - -
Prci10g2151 604 Gene3D - 10 188 IPR027417 -
Prci10g2151 604 FunFam Cell division control protein 48 homolog B 10 188 - -
Prci10g2151 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 247 IPR027417 -
Prci10g2151 604 Pfam AAA+ lid domain 478 523 IPR041569 -
Prci10g2151 604 Pfam AAA+ lid domain 212 247 IPR041569 -
Prci10g2151 604 SMART AAA_5 49 191 IPR003593 GO:0016887
Prci10g2151 604 SMART AAA_5 319 458 IPR003593 GO:0016887
Prci10g2151 604 Gene3D - 190 272 - -
Prci10g2151 604 PANTHER AAA-FAMILY ATPASE 16 548 - -
Prci10g2151 604 FunFam Cell division control protein 48-B-like protein 273 457 - -
Prci10g2151 604 FunFam spermatogenesis-associated protein 5-like protein 1 457 543 - -
Prci10g2151 604 CDD RecA-like_CDC48_NLV2_r1-like 18 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2151 Prci-Chr10 27220255 27227487 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2151 254 544 Calmodulin-binding Proteins AT3G56690 46.048 5.75e-83 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2151 - - gmx:100814288 927.161