LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci10g2143	ATGATACTGGCCTTGGTACTGTGCATCCTGGTTGCAGGAGCAGGGAATATAGCAGCACGGGAAGAGAGTTGCGATCACATGTGCGGGAACGTGAGCTTCCCCTATCCCTTCGGCACCAGGGATGGCTGCTTTATGAATCCAAAATTCCTCGTTACCTGCAACTCTTCTTCCCCTGAAATTCACATTCCCTATTTAGCAGGCTTTTACCAATTGACGTCCAACATCTCCCTGGATGCTGGCCATGGTGAGATACGCCTCTCTCTTAAAGCTACTCGTAAATGTGAGCATAAAGAAGGATACCTGAGGGCGCCTCTATTATTAGATGAACCGAATACTCCTTTTCTTATATCCAATAGAAAGAACAAATTCACTGTAGTGGGGTGTCGCACCATGGCTTCCATCAAAGATACCGTGGAAAATGGGTATGAAGCTGGGTGCCTGTCCAGATGTCAGAGCGTGAAATACGTGACGAACGGATCCTGTTCAGGTGTAGGCTGTTGCCAGATCACTTTCCCCAAAGCGCTTCAGAATTACACTATCAGTATTAAGCTCACTGAGGGTGACAATATTGAAGATGTGCGAGCATTTAATCCTTGCAGCTACGCATTTTTGGCGGAGGACGGATCCTTCAACTTTTCCGCTCGAGATCTTGGTCCTTGGAGTGATGATGAAAAAAGCTTTCCTGTGGTTTTCAATTGGGCTATTGGCACTGAGAAATGTGCCAGAGCCAAAACGAATACGAGTAGCTATGCATGTGGCACTAACAGTCATTGCCATGACTCAGAAAGTGGAATCGGCTATCTCTGCAAATGTAATGATGGCTTCCAAGGCAACCCCTACCTCTCTCACCCTCATCCACACAGCTGCCGAGATATTGATGAATGCAAGACGCAGAATCCTTGCAGTATGAGATGCCACAATAACGATGGTAACTGCACTTGTTCTTGTCCACCGGGATATAAAGGCGACGGACGCATTCGTGGATCAGGCTGCAAACTCCCTATTGTTGAAATATCATTAGGTATTACTATAGGTTTGCTGTTTGTTTTCATGTTAGTCTCTGCATTTTGTTGGGTGCACAAGAAAAGAGCAATTAAAAAAGTGCGAAGAAAATATTTTGAACAAAATGGAGGAATTATACTACAACAGTTTTTGCAGCAACAAGGTCACCAAGAAAGAACCAAAATATTTACCGAAGCTGAGCTTAAGAGTGCCACAAACAACTTTGATGAAGGTAAAATTCTTGGTCGTGGAGGGCAAGGTGTAGTTTACAAGGGTGTATTGCCTGACAAGACCCTTTTGGCTATTAAGAAGTCTAGAATAGGAGGGGATCCTAAACAAATTAAAGATTTCATTAATGAAATAGCTGTGCTTTCTCAAGTCAACCATAGAAATATAGTCAAACTTTTAGGATGTTGTCTTGAAACTGAAATTCCTTTGTTGGTTTATGAGTTTGTAGATAATGGAACCCTTCTTGACCACATAAATCCTTTGAAGAATGGGTTTTCTATTTCATGGGAAACTCGATTACAGGTAGCAGCAGAAACTGCTGAGGCTGTTTCATATCTACACTCTTCTGCTTCCATTCCAATCATTCATCGAGATATTAAATCTACCAACATACTTTTAGATCATAATCTTAGAGCAAAAGTGTCTGACTTTGGAGCTTCAAAACTTGTTCCTCTTGATGAAACTCATATTACCACTGTGGTGCAAGGTACTCTTGGATACTTGGATCCAGAATACCTTTTCATAGGTCAACTGAATGAGAAGAGTGATGTTTATAGCTTTGGAGTTGTTCTTATTGAGCTACTTACTGGAAAAAAAGCAATTGAATTTAGCAAGCCAGAGCAGGAAAACTTAGCCATGCACTTTGTGTCTTCAATGAAAGAAGACCGTTTGTGGGAAATTCTTGATAAAAGAGTACTAGACCAAAAGAATGAAAAGGAACTGAAAGAAGTGGCCTTGTTGGCAAGGAGATGCATAAAAGTAAAAGGCAAGGAAAGGCCGAGCATGAAAGAAGTAGCAAAGGAGCTAGAGGGTCTGATTTCAATGGAAAACCATCCTTTAGAGAACTAG	2079	0.419	MILALVLCILVAGAGNIAAREESCDHMCGNVSFPYPFGTRDGCFMNPKFLVTCNSSSPEIHIPYLAGFYQLTSNISLDAGHGEIRLSLKATRKCEHKEGYLRAPLLLDEPNTPFLISNRKNKFTVVGCRTMASIKDTVENGYEAGCLSRCQSVKYVTNGSCSGVGCCQITFPKALQNYTISIKLTEGDNIEDVRAFNPCSYAFLAEDGSFNFSARDLGPWSDDEKSFPVVFNWAIGTEKCARAKTNTSSYACGTNSHCHDSESGIGYLCKCNDGFQGNPYLSHPHPHSCRDIDECKTQNPCSMRCHNNDGNCTCSCPPGYKGDGRIRGSGCKLPIVEISLGITIGLLFVFMLVSAFCWVHKKRAIKKVRRKYFEQNGGIILQQFLQQQGHQERTKIFTEAELKSATNNFDEGKILGRGGQGVVYKGVLPDKTLLAIKKSRIGGDPKQIKDFINEIAVLSQVNHRNIVKLLGCCLETEIPLLVYEFVDNGTLLDHINPLKNGFSISWETRLQVAAETAEAVSYLHSSASIPIIHRDIKSTNILLDHNLRAKVSDFGASKLVPLDETHITTVVQGTLGYLDPEYLFIGQLNEKSDVYSFGVVLIELLTGKKAIEFSKPEQENLAMHFVSSMKEDRLWEILDKRVLDQKNEKELKEVALLARRCIKVKGKERPSMKEVAKELEGLISMENHPLEN	692

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci10g2143	692	Pfam	Wall-associated receptor kinase galacturonan-binding	24	77	IPR025287	GO:0030247
	Prci10g2143	692	SMART	serkin_6	409	683	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci10g2143	692	ProSiteProfiles	Protein kinase domain profile.	409	691	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci10g2143	692	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	531	543	IPR008271	GO:0004672\|GO:0006468
	Prci10g2143	692	SUPERFAMILY	EGF/Laminin	291	324	-	-
	Prci10g2143	692	Gene3D	Transferase(Phosphotransferase) domain 1	486	690	-	-
	Prci10g2143	692	Gene3D	Phosphorylase Kinase; domain 1	381	485	-	-
	Prci10g2143	692	CDD	EGF_CA	291	323	-	-
	Prci10g2143	692	SMART	egf_5	239	290	IPR000742	-
	Prci10g2143	692	SMART	egf_5	294	332	IPR000742	-
	Prci10g2143	692	Gene3D	Laminin	245	293	-	-
	Prci10g2143	692	FunFam	Wall-associated receptor kinase 2	379	485	-	-
	Prci10g2143	692	CDD	STKc_IRAK	415	682	-	-
	Prci10g2143	692	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	19	682	IPR045274	GO:0007166
	Prci10g2143	692	SMART	egfca_6	291	332	IPR001881	GO:0005509
	Prci10g2143	692	Pfam	Protein kinase domain	410	677	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci10g2143	692	Gene3D	Laminin	294	333	-	-
	Prci10g2143	692	FunFam	Wall-associated receptor kinase 2	486	692	-	-
	Prci10g2143	692	SUPERFAMILY	Protein kinase-like (PK-like)	392	679	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci10g2143	Prci-Chr10	26946637	26952188	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci10g2143	18	682	Receptor kinase-like Gene Family	AT1G21230	44.557	0.0	546

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Prci10g2143		Pkinase	1.9e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci10g2143	-		-	qlo:115959581	707.983