Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2111 ATGGTGAAAATGAAGAAACACATTGAGGAAGAAGAAGGAGAGATTGAATGGCAAGAAGCAGCAGCCATGGCTGCCAGTCTTCTCAAAGCTCGGAGATCAGCAAGAAAGAGATTCATTGGGGTTCGTCAGAGACCTTCTGGGAGATGGATTGCAGAAATCAAAGACACAATTCAAAACATAAGAGTTTGGTTGGGTACTTATGATTCTGCAGAAGAAGCTGCAAGAGCTTATGATGAAGCAGCTTGCTTGCTTCGTGGAGCCAACACTCGCCGAAACTTCTGGCCTTCTTCTCATCAGTTTAATAATTCCCCGGCAAATCCAGTTCTTCCCAGAAAGATTGCCAATCTCATCCTTCTTCGGCTCAAAGCTCGAAACCTTGCTTCTTGTAATTCTGCTCCATTGGGCCATTTTCCCAGTAACCAAACAGAAGAAGAAGAACCCAAGATCCAGCTTGATTATTTTCTTGATGGGTCTGATAATTATAGATCTGGGGGTACTACTAATGGTTTTTGTAGTGATGGAGTGATTGAAGAGGGCTGTGGGAAGAGATTCAATCATGAGGAAAGTGTAGGAAAATCAGAAGAAGATAAGGTGGCTAATCTCATGCTTCTTAGGCTAAAACATGACACAGTCTCTGATTCTGAAGTCACTCATTTTCCCAGTAACCAAACAGGTTTGTACAACTTTCTAGAAGAGTCAGACAATAGTTTTTTCACTGATTTTGGATTTGGAAACAAAACTAACATGGATGATGAAGTAGGATTATTTAGTGAAGAAAATTATTATGAGGTGCAATTGAAAATGATTGAGGAAAACATTGAAATTAGAAGGGAAAAGGAAAGGTTTATTGATGATGAATCTGATATGAAGAAGTTCATGGATTTCCAGTTTTTGGATAACGTGGGATCGATTTGTTATTCTTCTTCTCCATTTGAGATCGCAGAGGAGATGATAGGGCCAATGGATCAGCAAGACTTACATGATTATGAACATGATGGTGCTGCAAATTATGAACCATCATTTCTCAGAGAAACTTTTAGGATAAAATATGAAAGAAAATTCTCAGCTTGTCTGTATACCTATGTTGGTGTTTCTGAGTGCTTGAGGCTGCAATTTGAATCAGAAAATGCAGATTATGGGTTGGAAAGTTTCTGA 1155 0.3922 MVKMKKHIEEEEGEIEWQEAAAMAASLLKARRSARKRFIGVRQRPSGRWIAEIKDTIQNIRVWLGTYDSAEEAARAYDEAACLLRGANTRRNFWPSSHQFNNSPANPVLPRKIANLILLRLKARNLASCNSAPLGHFPSNQTEEEEPKIQLDYFLDGSDNYRSGGTTNGFCSDGVIEEGCGKRFNHEESVGKSEEDKVANLMLLRLKHDTVSDSEVTHFPSNQTGLYNFLEESDNSFFTDFGFGNKTNMDDEVGLFSEENYYEVQLKMIEENIEIRREKERFIDDESDMKKFMDFQFLDNVGSICYSSSPFEIAEEMIGPMDQQDLHDYEHDGAANYEPSFLRETFRIKYERKFSACLYTYVGVSECLRLQFESENADYGLESF 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2111 384 FunFam ethylene-responsive transcription factor RAP2-11 36 95 - -
Prci10g2111 384 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Prci10g2111 384 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Prci10g2111 384 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Prci10g2111 384 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Prci10g2111 384 SUPERFAMILY DNA-binding domain 37 95 IPR016177 GO:0003677
Prci10g2111 384 CDD AP2 36 93 IPR001471 GO:0003700|GO:0006355
Prci10g2111 384 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Prci10g2111 384 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Prci10g2111 384 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 14 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2111 Prci-Chr10 26197542 26198696 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2111 35 117 AP2-EREBP Transcription Factor Family AT5G19790 63.855 1.35e-29 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci10g2111 AP2 8.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2111 K09286 - csin:114283883 203.756