Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2098 ATGGGTAGGTCACCTTGTTGTGAGAAAGTGGGGTTGAAGAAAGGGCCATGGACTCCTGAGGAAGACCAGAAGCTCATCTCTTACATTGAACAACATGGCCATGGAAGCTGGCGTGCTTTGCCTTCCAAAGCTGGACTTGAGAGATGTGGAAAAAGTTGCAGACTGAGGTGGACGAATTATCTGAGACCTGATATCAAACGAGGAAAGTTCAGTTTGCAGGAAGAGAGAACCATTATTCAACTTCATGCTCTTCTTGGAAACAGATGGTCAGCCATAGCAGCTCACTTGCCCAAGAGAACAGACAATGAGATTAAGAATTACTGGAACACTCATCTCAAGAAGCGGCTTGACCGAATGGGAATCGACCCGGCTACGCACCGGCCTAAGCTTGACACCACCGGCGTTGGCTTGGCTAGCTCCAGCCTCAGCCACATGGCTCAGTGGGAGAGTGCCCGGCTTGAGGCCGAAGCCAGACTAGTGAGAGAGTCCAAGCTCCAGCTCGGCTCATGCCCATCTTTCCCCAGCTCCCCTCAACCGGCGGCTCGACTCGTCCTCAACAAAATCTCGGCTCGGCCGTCGGTGCCGCCATGCCTTGACGTGCTCAAAGCATGGCAGAATTCATGGTCATTGCCGACTAGTACTACTACAGCGGAAGACAAAAACACCAGAATGCATAACATGTACGCCTTGATGCTCTCCGCCGCCGCCGACGACCTCGAGTCGCCGACGTCCACCTTGACCTTCCCGGAACCCATGTTACCAACTAGCTCCACCACCGTAGGATTATTACCCAATGAAAAAGTCATCATCCCTCCGGCCACCACGACCACCACCACCACAACGGTTAGTTCTATCTCCGCCGCAGGAATCGAACCATGGGGCTGTTTTCCTTTGCCGGAGGAGAACCACGACATGGCGATGATCATCGGAGAAAGAAGAACAGAAACTTTGCAAGACGACGACATTATGGTGGCAGTGGAGGCATTTATGGCAGAAAGGTTCAAGAATGTAGAAGCCAATTTACCAGAAGGTATGAACTGTACTAAAGATAATGATGATGATGATGTGCTTGTTTTCGAATCCAACGAGAGTCTGGGCAACTTGGGGTTCGTGGATATTAATGGCGAAAGCATGATTTGCGGAAACACAAACTTTGAGGAAACGAAGAATCATTACTGGAATAGTATGTGTAGTACCCAAGCTTGGTGA 1209 0.5045 MGRSPCCEKVGLKKGPWTPEEDQKLISYIEQHGHGSWRALPSKAGLERCGKSCRLRWTNYLRPDIKRGKFSLQEERTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKRLDRMGIDPATHRPKLDTTGVGLASSSLSHMAQWESARLEAEARLVRESKLQLGSCPSFPSSPQPAARLVLNKISARPSVPPCLDVLKAWQNSWSLPTSTTTAEDKNTRMHNMYALMLSAAADDLESPTSTLTFPEPMLPTSSTTVGLLPNEKVIIPPATTTTTTTTVSSISAAGIEPWGCFPLPEENHDMAMIIGERRTETLQDDDIMVAVEAFMAERFKNVEANLPEGMNCTKDNDDDDVLVFESNESLGNLGFVDINGESMICGNTNFEETKNHYWNSMCSTQAW 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2098 402 CDD SANT 69 112 IPR001005 -
Prci10g2098 402 Gene3D - 11 67 - -
Prci10g2098 402 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 213 - -
Prci10g2098 402 CDD SANT 16 61 IPR001005 -
Prci10g2098 402 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci10g2098 402 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci10g2098 402 SMART sant 66 114 IPR001005 -
Prci10g2098 402 SMART sant 13 63 IPR001005 -
Prci10g2098 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Prci10g2098 402 FunFam MYB transcription factor 69 116 - -
Prci10g2098 402 Gene3D - 69 116 - -
Prci10g2098 402 FunFam MYB-related transcription factor 13 66 - -
Prci10g2098 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Prci10g2098 402 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Prci10g2098 402 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci10g2098 402 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2098 Prci-Chr10 25719601 25722006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2098 1 253 MYB Transcription Factor Family AT3G01140 59.387 7.07e-100 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci10g2098 Myb_DNA-binding 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2098 K09422 - gmx:100809025 424.861