Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2072 ATGCACATACCTAAAAGGATCACAACTCTTGTTTATGTAAACTCTTCCAAAACTAGCAAGATGGATCTGCAAAATATGCAAAACCAAAGTATGCATTTGGTTCTGTCCTCTGATGCCAAGCCAAGGCTGAAATGGACTCCTGAGCTTCACCAACGATTCCTTGATGCTGTTAATCAGCTTGGAGGGGCTGAAAAGGCAACCCCAAAGAGTCTTATGAGGGTGATGGGGATTCCAGGTCTAACCTTGTACCACCTGAAGAGCCATTTACAGAAATACAGACTTGGAAAAAGCCCACAATCAGAGGCCTTATACGATGATAAACATGAAGATTATGTAGAAGCTCAAAGCAGTGATGGCCATTGCAGCAGGGAAACCACTGTGGGTACCCAGAGTCGGATGACTGACCAGCAGATTGCTCAAGCTCTCCAACTACAAATGGAAGTTCAGAGGAAGCTTTATGAACAAATTGAGGTACAGAGGCATTTGCAGCTTCGGATTGAAGCTGAAGGGAAATACTTACAGTCAGTGCTAGTAAAAGCCCAGGAAGCACTTGGAGGGTACAATCCTTCTGCTGCAGGAATAGAACATGCAAAAGCTGAGCTCTCTCAATTAGTCTCAATAATCAACAATGGCTGCCCGAGTTCCCCGATCTCAGAACTGACAGAAACTGGAGTTATAAGCTTGAAAGACGGAGGAGAGAGGAAGCAAAGCAGAGGGACCATGTGTTCATTGGAGAGTTCCTTAACATCCTCTGAAAGCTCAGAGACAAAGGAAGAGGAGCCTCAAAAATCTAACCGAACTTCGGTTGAATTGCAATTGATGACTGTTCATCCAGAAGATGATAAAGAATTGAATGCTGACTCAAAGAATCAAGCTTGTGGAAGAAAGAGGAGTGGAACCACTGATTCTGATGGTTACTGCGTGGACCAACCAATCACTAAAAGATGCGGCAACCAGTCCCGGAAACTTGAGTCATCTGAATTGCTTGATCTGAACAGCCAGTATCACAGTGACACTGACTCAGACTCGAAAACCATAGACTTGAATTGCAGTTCAACGAACAGTTTTAGCTACTTGGAACCTTGA 1086 0.4411 MHIPKRITTLVYVNSSKTSKMDLQNMQNQSMHLVLSSDAKPRLKWTPELHQRFLDAVNQLGGAEKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSPQSEALYDDKHEDYVEAQSSDGHCSRETTVGTQSRMTDQQIAQALQLQMEVQRKLYEQIEVQRHLQLRIEAEGKYLQSVLVKAQEALGGYNPSAAGIEHAKAELSQLVSIINNGCPSSPISELTETGVISLKDGGERKQSRGTMCSLESSLTSSESSETKEEEPQKSNRTSVELQLMTVHPEDDKELNADSKNQACGRKRSGTTDSDGYCVDQPITKRCGNQSRKLESSELLDLNSQYHSDTDSDSKTIDLNCSSTNSFSYLEP 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2072 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 97 IPR017930 -
Prci10g2072 361 SUPERFAMILY Homeodomain-like 39 95 IPR009057 -
Prci10g2072 361 MobiDBLite consensus disorder prediction 332 361 - -
Prci10g2072 361 MobiDBLite consensus disorder prediction 231 312 - -
Prci10g2072 361 MobiDBLite consensus disorder prediction 275 290 - -
Prci10g2072 361 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 17 274 IPR044848 GO:0003700
Prci10g2072 361 Coils Coil 139 159 - -
Prci10g2072 361 Gene3D - 39 97 - -
Prci10g2072 361 FunFam Myb family transcription factor 39 97 - -
Prci10g2072 361 Pfam Myb-like DNA-binding domain 42 93 IPR001005 -
Prci10g2072 361 MobiDBLite consensus disorder prediction 291 312 - -
Prci10g2072 361 NCBIfam myb-like DNA-binding domain, SHAQKYF class 40 95 IPR006447 GO:0003677
Prci10g2072 361 Pfam MYB-CC type transfactor, LHEQLE motif 137 182 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2072 Prci-Chr10 25126736 25128613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2072 31 315 G2-like Transcription Factor Family AT1G69580 51.333 6.74e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Prci10g2072 Myb_DNA-binding 8.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2072 - - pcin:129321718 696.041