Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2068 ATGGGCAGGGTAAAGCTAAAGATTAAGAGGCTGGAGAACACCAATGGTCGCCAGGCGACTTTTGCTAAAAGAAAGAATGGAATCATAAAGAAGGCTACTGAATTATCAATATTGTGCGATATAGATATCATACTGCTCATGTTCTCTCCATCTGGCAAGCCCTCATTGTGCAGAGGAAGACGCAGTAACATGGAGGAGGTTATTGCAAAGTTTGCCCAGTTAACTCCACAGGAAAGAGCAAAAAGGAAGTTGGAGAGTTTGGAGGCACTGAAAAAAACATTTCGGAAGCTAGACCATGATGTCAATATACAAGAATTTCTGGGTACAAGTAGTCAAACTATTGAGGACCTAAGGAATCAATCCAGGTTATTACAAACTCAAATTTCTGAAATGCATAAAAGATTAAGCTATTGGATGGATCCTGACAAAATAAACAATATGGAACAATTGGCACAAATGGAAAATTCAATCATGGAGTCTCTTAATCACATTCGAATATGCAAGGAAAATGTACAGAAGCAACAACTTGCGAAATTGGAATGCACTAACCAGTTCAATGAGATGCAGATTCCCTGCAGAATCAGTACTGATCAACATCTTCAATCACTTTCATGGATTCCTAACAATGACGGTCACCATATATTACCTGAGGACTCAGACTTGCTTCTTCACAAAGAACTTGAGTGCTCTGCAAGCTCTTCCTTTGGGAGTTATGCCAGTTATCTTGGCTCAAGTGCAAAAACAGAAATGTCTAGTTCTGGGCAAGAAAATGGTGTCATCACTGAATTGACCAGTAATGCTCCCCTGAGACTTCAATTGAGCGGGCAGTTTCAATATGGACTTCCATACAATTTCAATTTACTGGATGATACGAAGTTCCAATCAGCTGTGGACATTATTCCACATGAAAACCCCTCAGATTATCACGTACATGGAAGCATTGAAGCGCCTCGACCTGGATGTGACAATAACCACCGTGGATGGGCTTCCACATCAGGGTCCAGTGCTATAACTATGTTTGATGAGCAATTGTATGCCCAGCAACCAAACTGGTCCCTCCAGGCATCCGCTAATGATGTTGCTAGAGAACTTCAGTCATGCTTGTGA 1107 0.4128 MGRVKLKIKRLENTNGRQATFAKRKNGIIKKATELSILCDIDIILLMFSPSGKPSLCRGRRSNMEEVIAKFAQLTPQERAKRKLESLEALKKTFRKLDHDVNIQEFLGTSSQTIEDLRNQSRLLQTQISEMHKRLSYWMDPDKINNMEQLAQMENSIMESLNHIRICKENVQKQQLAKLECTNQFNEMQIPCRISTDQHLQSLSWIPNNDGHHILPEDSDLLLHKELECSASSSFGSYASYLGSSAKTEMSSSGQENGVITELTSNAPLRLQLSGQFQYGLPYNFNLLDDTKFQSAVDIIPHENPSDYHVHGSIEAPRPGCDNNHRGWASTSGSSAITMFDEQLYAQQPNWSLQASANDVARELQSCL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2068 368 Coils Coil 77 97 - -
Prci10g2068 368 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Prci10g2068 368 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci10g2068 368 CDD MADS 2 54 - -
Prci10g2068 368 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Prci10g2068 368 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Prci10g2068 368 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Prci10g2068 368 Coils Coil 114 134 - -
Prci10g2068 368 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Prci10g2068 368 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci10g2068 368 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci10g2068 368 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci10g2068 368 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2068 Prci-Chr10 24876914 24882424 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2068 1 350 Type I MADS-box Gene Family AT2G03060 51.175 8.85e-116 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci10g2068 SRF-TF 1.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2068 - - lang:109356063 494.197