Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2059 ATGTTGGCACTTGTTGAGAAAACGCGGAACCCGATACCCACTGCACTACAGTCTTTGCACTTCTCTTCCTCCACTCCACTTTCTTCGCTGAAGCTTCTCTTGCATTTTTACGGTTTGGGATCGATGAGCTGTCAACTGGTGCTGTATGTCGATCGTCTGGTACGTCCTGTGAACGTTGAGACGGTGACTCTTCCGACTCAGTTGCTGTCTGATCCGTCTCCGGCGACTAAGTCCTCGGACGTTGCGGGACCCTCTAGTTCTGCGCCGCTGGCGGATAGCGATGATGCTGGGCCGAAGCATGATGAGGATGGTGGTGAGGATGAGCCACTGATACCGAACGCGGAGTGTCGCATTTGTCAGGAGGAAGATAGCATTAGCAATTTAGAAATACCTTGCGCCTGTAGCGGCAGTCTGAAGTATGCCCATCGAAAGTGTGTCCAGCATTGGTGTAATGAGAAAGGAGATACAATTTGTGAGATATGCAATAAGCCTTATCAACCTGGTTATGTTGCCCCTACTCCTTGCCCTAATCCTGAGGAAACTGCCATTGATATTGGTGGAGGCTGGACGATCTCTGGCACACCTTTGGACCTGCATGATCCTCGGATCTTGGCTATTGCAGAGGCTGAACGCCAGTTCTTGGAAACTGAATATGATGAGTATGCTGTTTCTAATGCCAGTGGAGCTGCCTTTTGCGGTTCAGCTGCTTTAATTTTAATGGCCCTTCTACTCTTGCGGCATGCAGTTTCTGTTCCAGATGCTGATGCAGATGATGATCCATCAACTGTCTTCTCTATCATCTTACTTCGTGCAGCTGGATTTCTCTTACCTTGCTATATTATGGCTTGGGCAATCAGCAGCTTGCAACGTCGGAGGCAAAGACAAGAGGCAGCAGCATTGGCAGCGACCCAAGTTGCTTTTGTTCTCCAATCTGGGCAGCGGAGGGGCCTGCAATTCGCCATAGCACCAGGACCGCAGATTGTCATGGCTCAAGTGTTTATCAAGTGGTTAAAGTGA 1017 0.4966 MLALVEKTRNPIPTALQSLHFSSSTPLSSLKLLLHFYGLGSMSCQLVLYVDRLVRPVNVETVTLPTQLLSDPSPATKSSDVAGPSSSAPLADSDDAGPKHDEDGGEDEPLIPNAECRICQEEDSISNLEIPCACSGSLKYAHRKCVQHWCNEKGDTICEICNKPYQPGYVAPTPCPNPEETAIDIGGGWTISGTPLDLHDPRILAIAEAERQFLETEYDEYAVSNASGAAFCGSAALILMALLLLRHAVSVPDADADDDPSTVFSIILLRAAGFLLPCYIMAWAISSLQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGPQIVMAQVFIKWLK 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2059 338 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 42 295 IPR033275 -
Prci10g2059 338 SMART ringv_2 115 162 IPR011016 GO:0008270
Prci10g2059 338 SUPERFAMILY RING/U-box 113 166 - -
Prci10g2059 338 Coils Coil 204 224 - -
Prci10g2059 338 MobiDBLite consensus disorder prediction 67 86 - -
Prci10g2059 338 Pfam RING-variant domain 116 161 IPR011016 GO:0008270
Prci10g2059 338 CDD RING_CH-C4HC3_MARCH 116 162 - -
Prci10g2059 338 ProSiteProfiles Zinc finger RING-CH-type profile. 108 168 IPR011016 GO:0008270
Prci10g2059 338 Pfam Protein of unknown function (DUF3675) 167 285 IPR022143 -
Prci10g2059 338 FunFam RING/FYVE/PHD zinc finger protein 104 172 - -
Prci10g2059 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 170 IPR013083 -
Prci10g2059 338 MobiDBLite consensus disorder prediction 67 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2059 Prci-Chr10 24192290 24200194 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2059 112 191 C3H Transcription Factor Family AT2G37950 36.957 4.45e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2059 - - gmx:100812998 394.815