Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2045 ATGATAGTTTCTTTCTCTCCCTGTTGTTTCTTCAGGGAAAGAAGAATGGCTTCCACGGGGTTCCTGGTCGCAACGGCTTTTCTCACGGTGGTTTCCTCTGCCTACAGCGACGGCGGAGGGTGGATTAATGCCCACGCTACCTTCTACGGAGGAAGTGATGCGTCGGGGACAATGGGTGGGGCTTGTGGGTATGGGAATCTGTACAGCCAGGGCTATGGAACCAACACTGCTGCTCTGAGCACTGCCCTGTTCAACAATGGCCTGAGCTGTGGGTCATGCTTTGAGATTAGGTGTGCCAATGATGCCAAGTGGTGCCTCCCTGGCTCTATTGTGGTCACGGCCACCAATTTCTGTCCTCCAAACAACGCCTTACCCAACAATGCCGGTGGCTGGTGCAACCCTCCCCTCCAGCACTTTGACCTCGCCCAGCCTGTCTTCCAGCGCATTGCCCAGTACAGAGCCGGGATTGTCCCTGTTGCCTACAGGAGGATACCCTGTATGAGGAAGGGAGGGATCAGATTCACAATTAATGGGCATTCCTACTTCAACCTGGTCCTCATCACCAACGTGGGAGGCGCCGGAGATGTTCATGCGGTGGCCGTGAAAGGATCCAGAACGGGCTGGATGGCAATGTCAAGGAACTGGGGTCAGAATTGGCAGAGCAACAACTACCTTAACGGACAAAGCCTGTCCTTTAAGGTCACCACCAGCGATGGTCGCAGCGTGCTGTCCTCTAATGTTGCTCCCGCAGGCTGGTCTTTTGGCAAACTCACCGGGGCTCAGTTCCACTAA 792 0.5492 MIVSFSPCCFFRERRMASTGFLVATAFLTVVSSAYSDGGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCFEIRCANDAKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLAQPVFQRIAQYRAGIVPVAYRRIPCMRKGGIRFTINGHSYFNLVLITNVGGAGDVHAVAVKGSRTGWMAMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRSVLSSNVAPAGWSFGKPXTGAQFH 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2045 264 Gene3D - 171 263 IPR036749 -
Prci10g2045 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 171 IPR007112 -
Prci10g2045 264 Pfam Expansin C-terminal domain 172 249 IPR007117 -
Prci10g2045 264 SMART dpbb_1 76 161 IPR007112 -
Prci10g2045 264 SUPERFAMILY PHL pollen allergen 168 256 IPR036749 -
Prci10g2045 264 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576
Prci10g2045 264 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Prci10g2045 264 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
Prci10g2045 264 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576
Prci10g2045 264 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Prci10g2045 264 PRINTS Expansin/Lol pI family signature 246 260 IPR007118 GO:0005576
Prci10g2045 264 PANTHER EXPANSIN-A15 21 262 IPR002963 GO:0009664
Prci10g2045 264 Pfam Lytic transglycolase 76 161 IPR009009 -
Prci10g2045 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 260 IPR007117 -
Prci10g2045 264 SUPERFAMILY Barwin-like endoglucanases 40 189 IPR036908 -
Prci10g2045 264 FunFam Expansin 29 167 - -
Prci10g2045 264 PRINTS Expansin signature 146 159 IPR002963 GO:0009664
Prci10g2045 264 PRINTS Expansin signature 98 109 IPR002963 GO:0009664
Prci10g2045 264 PRINTS Expansin signature 217 238 IPR002963 GO:0009664
Prci10g2045 264 PRINTS Expansin signature 110 120 IPR002963 GO:0009664
Prci10g2045 264 PRINTS Expansin signature 182 203 IPR002963 GO:0009664
Prci10g2045 264 PRINTS Expansin signature 129 146 IPR002963 GO:0009664
Prci10g2045 264 PRINTS Expansin signature 170 182 IPR002963 GO:0009664
Prci10g2045 264 PRINTS Expansin signature 71 85 IPR002963 GO:0009664
Prci10g2045 264 PRINTS Expansin signature 246 262 IPR002963 GO:0009664
Prci10g2045 264 CDD DPBB_EXPA_N 40 166 - -
Prci10g2045 264 Gene3D - 25 166 IPR036908 -
Prci10g2045 264 FunFam Expansin 171 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2045 Prci-Chr10 23478695 23480411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2045 27 264 Expansin Gene Family AT2G03090 81.513 9.94e-150 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2045 - - tcc:18610379 451.44