Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2042 ATGGAAGAGAGAAGTGATTCTTCTGAGAAGATTGATGAAGTTATGCTTCCAGGGTTCAGGTTTCACCCAACTGATGAGGAGCTTGTTGGGTTCTACCTCAAGAGAAAGATTCAGCAGAGACCTCTCTCTATAGAACTCATAAAGCAGCTTGATATCTATAAATATGATCCATGGGATCTTCCAAAGTTGGCAAGTACGGGTGAGAAAGAGTGGTATTTTTACTGTCCTAGAGACAGAAAATACAGAAACAGTGCAAGGCCTAATAGGGTGACAGGAGCTGGATTCTGGAAAGCCACAGGTACTGATAGGCCCATATATTCCTCTGAGGGCTCCAAGTGCATTGGGTTGAAGAAATCTCTTGTCTTTTACAAAGGAAGAGCTGCCAAAGGAGTCAAAACTGACTGGATGATGCATGAGTTCAGATTACCCTCTCTCTCTGCTGACTCATCCTCTTCACCAAAAAAGTTCACAGAAAGAACCATCCCTGCTAATGACTCATGGGCAATCTGCAGAATATTCAAGAAAACAAACTCTACAGCCCAGAGAGCTCTCTCTCATTCATGGGTCTCTCCTTTCCCTCATCATGAAATGAACACTTCTGAGATGCTAACCAACGACGAAGACACTTCCAAGTTTTGTTCAGATCAAAACATGTCATTGACAAAGAAAACTAGCTTACCCAACCAGTTCTGTACCACTCCTACAAATACCACCACAACCAGTAGTGTTCTTTGCCCTTTAGATAATATTGCCTCTTACAAACCCATCATTAACCCATTATTGCTTTACAAGCCCTTTGACCAATCACCCATCATTTCTAATAATTCAGACCTTATGTTTTCATCACCATCACCTCTCGAGCCATGCAGTACTGCTAAAGCAGCCACTGCCATGGACATTTCCTCAATGTTACTGAGCATGTCATCATCATCTTTTTTGCTTGGGGATCACTTTAGTACCAAGGCTTCATCATCATCTGAGGGTGCAAACAATTTTGGAGGGTTTCACCAAGAACAGTACAGCAGTAATAATACTGGGTGTTCATCATCATCATCATCAATAGCTTTACCTGTATTAATCCAAGATGGGAATAATGCATTGGTGAAGATGAATCACCCAGTGAATGTGGTAATGCCTAGAGTGCTGATGGAGGAGCAAGACCAGATGGAGACAGGAGGAGGATCCAATAATAATAATAATAATATGAATGGGTTTGCTGCTTTAAGCAGTGTCGGTAATTTGAATATGCATGAAGCATGGAAGTCAAATCTGCTTTGGGATAGTTCATCTTGTCCTTGTGATCACGTGCCCCCATCAAGTTATTCCACTACTACCAAGTGCTATACTTAG 1350 0.4178 MEERSDSSEKIDEVMLPGFRFHPTDEELVGFYLKRKIQQRPLSIELIKQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLSADSSSSPKKFTERTIPANDSWAICRIFKKTNSTAQRALSHSWVSPFPHHEMNTSEMLTNDEDTSKFCSDQNMSLTKKTSLPNQFCTTPTNTTTTSSVLCPLDNIASYKPIINPLLLYKPFDQSPIISNNSDLMFSSPSPLEPCSTAKAATAMDISSMLLSMSSSSFLLGDHFSTKASSSSEGANNFGGFHQEQYSSNNTGCSSSSSSIALPVLIQDGNNALVKMNHPVNVVMPRVLMEEQDQMETGGGSNNNNNNMNGFAALSSVGNLNMHEAWKSNLLWDSSSCPCDHVPPSSYSTTTKCYT 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2042 449 FunFam NAC domain-containing protein 35 24 178 - -
Prci10g2042 449 Gene3D NAC domain 24 180 IPR036093 GO:0003677|GO:0006355
Prci10g2042 449 ProSiteProfiles NAC domain profile. 15 175 IPR003441 GO:0003677|GO:0006355
Prci10g2042 449 SUPERFAMILY NAC domain 14 175 IPR036093 GO:0003677|GO:0006355
Prci10g2042 449 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 274 - -
Prci10g2042 449 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2042 Prci-Chr10 23127713 23129898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2042 2 316 NAC Transcription Factor Family AT1G26870 56.173 1.10e-109 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci10g2042 NAM 5.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2042 - - pcin:129284476 855.899