Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2024 ATGTCTTCCAGAAGATCCTCCTCCTCCTCCTCCCGTGATTCTTCCTCTGATAATATCACCGAAGCTCAGATCAACGACCTTGTCTCCAAGTTACAACAACTCATCCCTGAGCTTCGCTCCCCGCGACGTCGTTCCGACAAGGTTTCTGCTTCAAAGGTGTTACAAGAGACTTGTAACTACATCAAGAGCTTGCATAGAGAAGTTGATGATCTGAGTGAGAGACTGTCTGAGCTCTTGGCCAACACTGACTCCAACAGTGCTCAAGCCGCCATTATTAGGAGTCTTCTTATGTAA 294 0.4728 MSSRRSSSSSSRDSSSDNITEAQINDLVSKLQQLIPELRSPRRRSDKVSASKVLQETCNYIKSLHREVDDLSERLSELLANTDSNSAQAAIIRSLLM 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2024 97 Pfam Helix-loop-helix DNA-binding domain 23 65 IPR011598 GO:0046983
Prci10g2024 97 Gene3D - 21 93 IPR036638 GO:0046983
Prci10g2024 97 MobiDBLite consensus disorder prediction 1 20 - -
Prci10g2024 97 Coils Coil 61 81 - -
Prci10g2024 97 CDD bHLH_AtPRE_like 19 81 - -
Prci10g2024 97 FunFam Transcription factor ILI6 10 93 - -
Prci10g2024 97 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 22 86 IPR036638 GO:0046983
Prci10g2024 97 PANTHER TRANSCRIPTION FACTOR PRE 1 97 IPR044293 GO:0006355|GO:0040008|GO:0046983
Prci10g2024 97 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 8 64 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2024 Prci-Chr10 21856093 21857515 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2024 19 96 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 76.923 1.58e-35 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci10g2024 HLH 3.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2024 - - gmx:100804830 134.035