LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci10g2022	ATGGCGAGATGGCCGACGACGGCATTGTTTCCAAAAATCGATCTTAGAGAATTGCGGACCAAGGGTTGCATTTATTTGGTGTATATTTCTGCAATCTCTGGGGCTTTATCTCAAGAACCCGAACTTGGATCTACCCGTGTTGTCTTTCAGACGAATTACGGGGATATTGAATTTGGTTTCTTTCCCACAGTTGCACCCAAAACTGTTGATCACATTTTTAAACTTGTGCGACTTGGATGCTATAACACAAATCACTTTTTCCGGGTAGATAAGGGCTTTGTGGCCCAAGTAGCGGATGTTATGGGTGGAAGATCCGCTCCCATGAATGAAGAACAAAAAAGAGAAGCTGAAAAGACTGTTGTTGGTGAATTTAGCCAAGTCAAACATGTTCGAGGTATTCTTTCTATGGGAAGATACAGTGATCCAGACAGTGGTGGATCTTCATTTTCAATGCTTCTGGGAGATGCTCCTCATCTTGACGGCCAGTATGCAGTATTTGGAAGAGTCACTAGAGGCGATGATACATTGAGAAAGCTTGAGGAACTACCTACTCGTAAAGAAGGGATATTTGTTATGACACCGAGAGTGAAGATTGCGAAGGAGACAGATCGATTTTGA	618	0.4288	MARWPTTALFPKIDLRELRTKGCIYLVYISAISGALSQEPELGSTRVVFQTNYGDIEFGFFPTVAPKTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVMGGRSAPMNEEQKREAEKTVVGEFSQVKHVRGILSMGRYSDPDSGGSSFSMLLGDAPHLDGQYAVFGRVTRGDDTLRKLEELPTRKEGIFVMTPRVKIAKETDRF	205

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci10g2022	205	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	132	147	IPR002130	GO:0000413\|GO:0003755
	Prci10g2022	205	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	60	75	IPR002130	GO:0000413\|GO:0003755
	Prci10g2022	205	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	86	98	IPR002130	GO:0000413\|GO:0003755
	Prci10g2022	205	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	161	176	IPR002130	GO:0000413\|GO:0003755
	Prci10g2022	205	CDD	cyclophilin	48	200	-	-
	Prci10g2022	205	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	48	198	IPR002130	GO:0000413\|GO:0003755
	Prci10g2022	205	SUPERFAMILY	Cyclophilin-like	46	192	IPR029000	-
	Prci10g2022	205	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	47	199	IPR002130	GO:0000413\|GO:0003755
	Prci10g2022	205	Gene3D	-	34	203	IPR029000	-
	Prci10g2022	205	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23	22	198	IPR044233	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci10g2022	Prci-Chr10	21713071	21728368	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci10g2022	47	183	U-box Gene Family	AT5G67530	31.724	1.77e-11	60.8

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci10g2022	-		-	pcin:129321584	390.963

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