Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2020 ATGGCGAGATGGCCGACGACGGCATTGTTTCCAAAAATCGATCTTAGAGAATTGCGGACCAAGGGTTGCATTTATTTGGTGTATATTTCTGCAATCTCTGGGGCTTTATCTCAAGAACCCGAACTTGGATCTACCCGTGTTGTCTTTCAGACGAATTACGGGGATATTGAATTTGGTTTCTTTCCCACAGTTGCACCCAAAACTGTTGATCACATTTTTAAACTTGTGCGACTTGGATGCTATAACACAAATCACTTTTTCCGGGTAGATAAGGGCTTTGTGGCCCAAGTAGCGGATGTTATGGGTGGAAGATCCGCTCCCATGAATGAAGAACAAAAAAGAGAAGCTGAAAAGACTGTTGTTGGTGAATTTAGCCAAGTCAAACATGTTCGAGGTATTCTTTCTATGGGAAGATACAGTGATCCAGACAGTGGTGGATCTTCATTTTCAATGCTTCTGGGAGATGCTCCTCATCTTGACGGCCAGTATGCAGTATTTGGAAGAGTCACTAGAGGCGATGATACATTGAGAAAGCTTGAGGAACTACCTACTCGTAAAGAAGGGATATTTGTTATGCCAACAGAGCGTATTACTATTCTATCATCTTATTACTATGAGACCATTTGCGTTGGCAGATACTCATACTCTGTGACATCATGTAGCTTGTGCTTCTAG 675 0.4222 MARWPTTALFPKIDLRELRTKGCIYLVYISAISGALSQEPELGSTRVVFQTNYGDIEFGFFPTVAPKTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVMGGRSAPMNEEQKREAEKTVVGEFSQVKHVRGILSMGRYSDPDSGGSSFSMLLGDAPHLDGQYAVFGRVTRGDDTLRKLEELPTRKEGIFVMPTERITILSSYYYETICVGRYSYSVTSCSLCF 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2020 224 Gene3D - 34 207 IPR029000 -
Prci10g2020 224 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 48 204 IPR002130 GO:0000413|GO:0003755
Prci10g2020 224 SUPERFAMILY Cyclophilin-like 46 205 IPR029000 -
Prci10g2020 224 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 22 207 IPR044233 -
Prci10g2020 224 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 47 201 IPR002130 GO:0000413|GO:0003755
Prci10g2020 224 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 60 75 IPR002130 GO:0000413|GO:0003755
Prci10g2020 224 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 161 176 IPR002130 GO:0000413|GO:0003755
Prci10g2020 224 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Prci10g2020 224 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 86 98 IPR002130 GO:0000413|GO:0003755
Prci10g2020 224 CDD cyclophilin 48 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2020 Prci-Chr10 21713069 21726978 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2020 47 205 U-box Gene Family AT5G67530 29.940 2.18e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2020 - - pcin:129321584 418.698