Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2007 ATGAATCTGGTTTCTGGACAAATAGTTATGCCTCTTTTTGTGTTCCTAATGATTTTCCAATGTTATTTCTCTGTTGGTATCGCAGAAGATTGTGGAGGGAAGGAAATTGCATATTCCATTACAGTTGGCCAATCTGGTAAGTTCAAAACAGTTCAAGCAGCAGTTGATTCTATATCAAGGAACAATGCTCGGTGGGTTAAAATTCACATACATCAAGGAAAATACCTAGAAAAGGTACAGATTCCAAAAGATAAACCATGTATCTTGTTGGAAGGGGAAGGCAGAAGAGTTACAACAATTACGTACAATGATCATCAACAAACGGATACTAGCGCTACCTTCACCTCCTTTCCCAACAATGTCATTGTAGTTGGCATCACCTTCGAGAACTCGTTTGATCTCTCCACAGAATCGCGATTGGAGCAAAACGCGAGAGTAGTGCCAGCACTGGCAACGAGAATATATGGCGACAGATCAGCATTTTTGGATTGTGGCTTTTTGGGTTTTCAAGACACACTTTGGGATGTCCAAGGCCGTCATTACTTCAAGAATTGCTATATTCAGGGTGCTGTCGACTTCATTTTTGGCAACGGCCAATCCTATTTCGAGAATTGTTACGTGAACGTGACGTTAAGCACGAGGTCAAGCGTGGGTGTTCCTTGGGGTTGTATAACAGCACAAGGGCGAAGATCCGAGAAGGAAGCAAGTGGCTTTGTGTTCGGAGGAGGCAGAGTTGTGGGAACCGGTCCGGTTCTGCTAGGAAGAGCCTACGGCCCTTATTCAAGAGTCATATTTCACGGAACATTTCTAGATTCTCTGGTATCTCCTCAAGGATGGGATGCTTGGCATTACACACAACACAAGGGCAATTTGATGTATGCTGAAGTTGGTTGTGAAGGCCCAGGGGCAACTCTAGGGAAGCGAGTTCCATGGGAGACCAAACTCTCTGCTTCCAAGTTAAATCATCAATTTTCAAAATCATCATTTATAAATCAAGATGGATGGCTTGCAAATTTACCTAATTGA 1026 0.4308 MNLVSGQIVMPLFVFLMIFQCYFSVGIAEDCGGKEIAYSITVGQSGKFKTVQAAVDSISRNNARWVKIHIHQGKYLEKVQIPKDKPCILLEGEGRRVTTITYNDHQQTDTSATFTSFPNNVIVVGITFENSFDLSTESRLEQNARVVPALATRIYGDRSAFLDCGFLGFQDTLWDVQGRHYFKNCYIQGAVDFIFGNGQSYFENCYVNVTLSTRSSVGVPWGCITAQGRRSEKEASGFVFGGGRVVGTGPVLLGRAYGPYSRVIFHGTFLDSLVSPQGWDAWHYTQHKGNLMYAEVGCEGPGATLGKRVPWETKLSASKLNHQFSKSSFINQDGWLANLPN 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2007 341 Pfam Pectinesterase 44 332 IPR000070 GO:0030599|GO:0042545
Prci10g2007 341 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 38 337 - -
Prci10g2007 341 SUPERFAMILY Pectin lyase-like 38 336 IPR011050 -
Prci10g2007 341 ProSitePatterns Pectinesterase signature 2. 187 196 IPR033131 -
Prci10g2007 341 Gene3D - 33 340 IPR012334 -
Prci10g2007 341 FunFam Pectinesterase 34 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2007 Prci-Chr10 20391785 20396242 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2007 23 282 Carbohydrate Esterase AT2G19150 46.617 2.97e-73 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2007 - - gmx:100800737 374.785