Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1985 ATGGAGGGTCCTCCTTCCAACGATCTTTGTTCGGTGTGCCACGGAGACTACAACAATCCTTGCCAAGCCAATTGCTCACACTGGTTTTGCGGAAGTTGTATTATGCAAGTGTGGCGCCATGGATCAACTGTCAGGCCATGTAAATGCCCCCTATGTCGTCGTCAAATTACTTTGCTGGTTCCAACAGAGGACTTGTTGAGGCAGCGATATGACCCTGAAGTTGCTGAGGTTCTACAAAATATTGAGGCATACAATCGTTTGTTTGGTGGTCAGGCAACTGGTCTTGTTCAGAGAATGCAAGATCTTCCTTTTCTCTTGCGAAGGCTGCTGCGAGAGCTGATGGATCCTCACAGAACACTTCCCCTTGTCATTAAGGCTCGTGTCTACATTGCAATGATATCAAGTGCTGCCTACATTGTAAGCCCTGTTGACATTATTCCAGAAGCGATACTGGGAATATTTGGTTTGTTGGATGATGTCCTTATTGCGCTCATCTGCTTCCTTTATGTTGCTTCTGTTTATAGATCAGTACTCTATTTCCGTCATGGGGGCTCCCGGGCCTGA 564 0.4663 MEGPPSNDLCSVCHGDYNNPCQANCSHWFCGSCIMQVWRHGSTVRPCKCPLCRRQITLLVPTEDLLRQRYDPEVAEVLQNIEAYNRLFGGQATGLVQRMQDLPFLLRRLLRELMDPHRTLPLVIKARVYIAMISSAAYIVSPVDIIPEAILGIFGLLDDVLIALICFLYVASVYRSVLYFRHGGSRA 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1985 187 ProSiteProfiles Zinc finger RING-type profile. 10 53 IPR001841 -
Prci10g1985 187 SMART ring_2 10 52 IPR001841 -
Prci10g1985 187 Pfam Protein of unknown function (DUF1232) 130 164 IPR010652 -
Prci10g1985 187 CDD RING-HC_RNF113A_B 4 61 - -
Prci10g1985 187 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Prci10g1985 187 PANTHER UNCHARACTERIZED 2 182 IPR038896 GO:0061630
Prci10g1985 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 101 IPR013083 -
Prci10g1985 187 SUPERFAMILY RING/U-box 6 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1985 Prci-Chr10 19432233 19440759 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1985 35 185 C3H Transcription Factor Family AT1G72175 76.159 5.84e-71 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1985 K15707 - jre:109000985 297.745