Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1950 ATGGTGCGTTGGTCATTCACCACGGCACAGACATTCAAATTATTCTTCTCTTTATTTTTGCTTTGGAAGAAACTGATAATTTTGCTCGTCCTAATGGCCAAGAGACACCTTTTCTTCTTCTTCTTCCGGTTCTTTACAATTCTGTTCATCATTTTCCCGCCATGTATGTCCGCAAGTATAGAAACAGAGGCTCTCCTTCAGTTCAAGAAGCATTTGAAGGACCCTTTGAATTCTTTGGGTTCGTGGATAGATTCTGAGTCTCCCTGTGAATTCCACGGCATTACCTGTGATAAATTTTCCGGAAAAGTCATAGAAATTTCACTGGAAAATAAGTCTCTTTCCGGGGAGATTTTCCCGTCAATTTTTGATCTCCAGAGCCTTCGAGTTCTGTTACTTGCATCAAATTTTATTTCTGGGAAGCTTCCATTTGAAATAAGCAATTGCAGCAACCTTACAGTCTTGAACCTAACAGAGAATGACATGGTTGGGGCTATTCCAGACTTGTCTGGGATGAGAAATCTCAAAGTTCTTGACCTCTCAGCAAACTACTTCTCCGGGAGCTTCCCAAACTGGGTTGGAAATTTGACTGGTCTGGTTTCATTGGGGCTCGGGGAAAATGAATATGTTGAGAGTGAAATTCCTGAGACTCTTGGCAATCTGAAGAAATTGACATGGCTCTATCTTGGTGGTTCTCATTTGCGAGGAGAGATTCCAGAATCAATTTATGAAATGAAGGCTCTGGAGACACTGGATATTTCAAGAAACATGATCTCTGGGAAACTCTCCAAGTCAATTTTGAAGCTGAAAAATCTTTATAAGATTGAGCTTTTCTCAAACAATTTAACTGGGCAAATCCCAGCTGAGCTGGCAAACTTGACTAAACTTGAGGAGATTGACATTTCCAAGAACCACATGCATGGTAAATTGCCGGAGGTGATTGGTACTATGAAGAATTTGGTCGTTTTTCAACTCTATGAAAACAACTTTTCTGGAGAACTTCCTGCTGGGTTTGGAGATATGCAACATCTTGTTGGATTCTCAATTTATCGAAACAGCTTCTCTGGGAAAATACCAGAAAATTTTGGCCGATTTTCACCACTGGATAGCATTGATATATCAGAGAATCAATTTTCAGGTGAATTTCCAAAGTTCTTGTGTGAAAATAGAATGTTGAAATTTTTGCTTGCTTTGCAAAATAATTTCTCAGGTGAATTGCCTGAGACTTATGTTACTTGTAAATCACTGGAGAGATTCAGGGTCAGCAGGAATGGTTTGTCTGGAAAAATTCCAGATGAGCTTTGGGCACTTCCATTTGTAAAGATAATTGATTTAGCTGACAATAATTTTGATGGTGATATATCTCCAAAAATTGGGCTCTCTTCTAGCTTAAGTCAGTTAGTTCTAATGAAGAACAAGTTTTCAGGTAAGCTTCCTTCACAACTTGGCAAGCTGATGAATTTGGAGAAGCTATACTTGAGCAACAACAATTTCTATGGTGAAATACCAGCTGAAATTGGAGCTCTGAAGCAATTATCCTCTTTTCATCTAGAAGAGAATTCATTAACTGGATCAATACCTGCAGAACTTGGTAATTGTGCAAGGCTAGTAGACTTGAATTTTGCTCAGAATTTTCTTACTGGCACTATCCCGCAGTCAGTTTCACTTATGAGCTCATTGAACTCTCTTAATCTATCTGGCAACAAACTTACAGGCTCGATCCCAGAAAGCTTAGTGTCAATGAAATTGAGCTCAATTGATTTTTCCAAAAACCAGTTGTCTGGGAGAATTCCGAACAATCTTCTAATTATTGGTGGTGATGAAGCTTTTGTTGGAAACCCAGGACTTTGTGTTGATCAAAATTCAAGAACTCTTATGAATTCTGAATTCAACATTTGTACAAGCATACATGGTCCGAAAAAGGTCTTCGCTGATAAGATAATAATTCTTTGTACCATTGCTTCTGTCTTGGTTGTACTTTTGGTTGTGTTGCTTGTGAGTTACGGAGGCTTCAAGCATGAAAATGCAGATCTGGAGAAAAACATAAAAGGTCATAAGGAAACAGATTCAAAATGGAAAATGGCTGCTTTCCACCAAGTTGATCTTGATGTGAATGAAATATGTAATCTGGATGAAGATAATTTGATTGGAACTGGTGGCACTGGAAAGGTTTATCGAGTTAACTTGAAGAAAACTCGTTCAACAGTGGCTGTAAAACAACTATGGAAAGGAAATAGTGTAAAAATTTTGGCGGCAGAGATGGAGACTTTGGGGAAAATAAGGCATAGAAATATACTTAAGCTTTATGCTTCTTTGTTTAAAGGAGGATCAAACTATTTAGTGTTAGAGTACATGCCAAATGGTAATCTTTTTCAAGCTCTTCACAGACAGATAAAGGGTGGGAAACCAGAATTGGATTGGTACCAGAGATATAAAATTGCACTGGGCACCGCAAAAGGAATTGCCTATTTACATCATGATTGTTCTCCACCTATCATCCACAGAGACATAAAATCCAGTAACATTTTGCTTGATGAGGATTATGAGGCAAAAATTGCTGATTTTGGGGTCGCAAAATTTGCAGAAAAAACTGATCAGCAGTTGGGTTTTAGCTGTCTTGCTGGCACTCATGGTTATATTGCTCCTGTCCCACTGGATCAGGATACTCAATTCTCATGTTCTTTTCATCACTTGCATCTAATGAGAAGATAA 2709 0.3843 MVRWSFTTAQTFKLFFSLFLLWKKLIILLVLMAKRHLFFFFFRFFTILFIIFPPCMSASIETEALLQFKKHLKDPLNSLGSWIDSESPCEFHGITCDKFSGKVIEISLENKSLSGEIFPSIFDLQSLRVLLLASNFISGKLPFEISNCSNLTVLNLTENDMVGAIPDLSGMRNLKVLDLSANYFSGSFPNWVGNLTGLVSLGLGENEYVESEIPETLGNLKKLTWLYLGGSHLRGEIPESIYEMKALETLDISRNMISGKLSKSILKLKNLYKIELFSNNLTGQIPAELANLTKLEEIDISKNHMHGKLPEVIGTMKNLVVFQLYENNFSGELPAGFGDMQHLVGFSIYRNSFSGKIPENFGRFSPLDSIDISENQFSGEFPKFLCENRMLKFLLALQNNFSGELPETYVTCKSLERFRVSRNGLSGKIPDELWALPFVKIIDLADNNFDGDISPKIGLSSSLSQLVLMKNKFSGKLPSQLGKLMNLEKLYLSNNNFYGEIPAEIGALKQLSSFHLEENSLTGSIPAELGNCARLVDLNFAQNFLTGTIPQSVSLMSSLNSLNLSGNKLTGSIPESLVSMKLSSIDFSKNQLSGRIPNNLLIIGGDEAFVGNPGLCVDQNSRTLMNSEFNICTSIHGPKKVFADKIIILCTIASVLVVLLVVLLVSYGGFKHENADLEKNIKGHKETDSKWKMAAFHQVDLDVNEICNLDEDNLIGTGGTGKVYRVNLKKTRSTVAVKQLWKGNSVKILAAEMETLGKIRHRNILKLYASLFKGGSNYLVLEYMPNGNLFQALHRQIKGGKPELDWYQRYKIALGTAKGIAYLHHDCSPPIIHRDIKSSNILLDEDYEAKIADFGVAKFAEKTDQQLGFSCLAGTHGYIAPVPLDQDTQFSCSFHHLHLMRR 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1950 902 SMART serkin_6 709 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci10g1950 902 Pfam Protein kinase domain 711 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci10g1950 902 FunFam Protein kinase superfamily protein 784 859 - -
Prci10g1950 902 FunFam Receptor-like protein kinase HSL1 318 625 - -
Prci10g1950 902 Gene3D Ribonuclease Inhibitor 58 208 IPR032675 -
Prci10g1950 902 SMART LRR_typ_2 556 580 IPR003591 -
Prci10g1950 902 SMART LRR_typ_2 220 244 IPR003591 -
Prci10g1950 902 SMART LRR_typ_2 124 148 IPR003591 -
Prci10g1950 902 SMART LRR_typ_2 171 195 IPR003591 -
Prci10g1950 902 SMART LRR_typ_2 484 508 IPR003591 -
Prci10g1950 902 Pfam Leucine rich repeat N-terminal domain 61 97 IPR013210 -
Prci10g1950 902 ProSiteProfiles Protein kinase domain profile. 709 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci10g1950 902 SUPERFAMILY Protein kinase-like (PK-like) 706 884 IPR011009 -
Prci10g1950 902 ProSitePatterns Protein kinases ATP-binding region signature. 715 738 IPR017441 GO:0005524
Prci10g1950 902 FunFam Leucine-rich receptor-like protein kinase family protein 699 783 - -
Prci10g1950 902 Gene3D Ribonuclease Inhibitor 343 626 IPR032675 -
Prci10g1950 902 SUPERFAMILY L domain-like 85 404 - -
Prci10g1950 902 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 207 619 - -
Prci10g1950 902 ProSitePatterns Serine/Threonine protein kinases active-site signature. 831 843 IPR008271 GO:0004672|GO:0006468
Prci10g1950 902 Gene3D Ribonuclease Inhibitor 209 269 IPR032675 -
Prci10g1950 902 Gene3D Ribonuclease Inhibitor 270 342 IPR032675 -
Prci10g1950 902 SUPERFAMILY RNI-like 308 600 - -
Prci10g1950 902 Gene3D Transferase(Phosphotransferase) domain 1 693 894 - -
Prci10g1950 902 FunFam Probable inactive receptor kinase RLK902 58 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1950 Prci-Chr10 18498585 18502932 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1950 46 881 Receptor kinase-like Gene Family AT1G72180 57.412 0.0 957
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Prci10g1950 Pkinase 1.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1950 - - pcin:129322843 1671.37