Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1923 ATGCAAGATATGAAGCAGAGGCAGCATCAGCAAGACAAAGAAGAATCTAAGAAGAAGGAGCGTCACATTGTCTCTTGGACTCAAGAGGAGGATGATATACTTAGAGAGCAGATTAGCATTCACGGAACAGACAATTGGACAATTATTGCATCTAAATTCAAGGATAAAACGACAAGACAGTGCAGGAGAAGGTGGTACACATACTTGAATTCTGATTTCAAGAAAGGAGGGTGGTCACCAGAGGAAGATATGCTATTATGTGAGGCTCAAAAGATTTTTGGCAACAGATGGACAGAAATAGCTAAGGTGGTTTCAGGCAGAACGGATAATGCTGTGAAAAACCGCTTCTCCACACTATGTAAAAAGAGAGCGAAATATGAAGCCTTGACCAAAGAGAACAGCCCTTCATTCATCAATTCAAATAACAAAAGGATAATTTTTCAACATATTTACAGTACAGATGCTACATCAGAGGCTGCAGAATCAATTAAGAAGATGAGGGCCCACATCCCTGATGCTGCAGCAAGTATCACTTATGGAGACAGATCACGTAAACTATTTGGAACACCAGTTAGTCAGCAACCTAGAGTGCCATTTGGTATATTATCTAATTTCAATGATAACAGCTTGCCAGACCAACGTCCTGTCTGCAATGTCAAGTTCAGCAGTTATGCCCAAAATAACAAGACTCAAGGAACATTCCTCAAAAAGGATGATCCAAAGATAAGTGTGTTGATGCAGCAAGCGGAATTATTAAGCTCACTTGCAGTGAAAGTTAACACAGAGAACATGGACCAGAGTCTTGAGAATGCATGGAAGGTTCTGCAAGATTTTCTGAACCGAACAAACAAATCAGATCTTTCAAGATATAAGATCACAGATTTACAGCTGGAAAATCTTAAAAATATGGCTGAGGACATAAAGAGTGGTCATGAGGGGAGCCAACCATATCCAAGGCAACCAGAGCTACATGAGGACTCTCCAAGCAGTTCCGAATATAGTACAGGATCAACTATCCTGCCCCGTTCAACTTGTGATGATTTGGAACATTCACTGCATCTAAATGTTAGAACAGAAGGGAAGCCTACAGCAAGTGAAGAGAAAAAAGGAGTTATTAGTTGTGGGAAACAAGTTTTTGCTGCTTCAACTGCAGATCAAGCAGATATCTTGCCATCTTGTGAGGAACAGATAGTCGATGATTTCATTGTTTCTGCCTTGTCAAGTGCAGAGTTCAGTTCCCCTATTCAGGTTACTCCTCTGTTCAGATCCTTGGCTGCAGGAATTCCTAGCCCACAGTTTTCAGAAAGTGAAAGGAACTTTCTGATGAAAACACTAGGAATGGAATCCCCATCACAGAAACAAAGCGCAAAAGCCTCACAACCACCACCTTGCAAAAGAGCCCTATTGCAGAGTCTATAA 1419 0.4109 MQDMKQRQHQQDKEESKKKERHIVSWTQEEDDILREQISIHGTDNWTIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALTKENSPSFINSNNKRIIFQHIYSTDATSEAAESIKKMRAHIPDAAASITYGDRSRKLFGTPVSQQPRVPFGILSNFNDNSLPDQRPVCNVKFSSYAQNNKTQGTFLKKDDPKISVLMQQAELLSSLAVKVNTENMDQSLENAWKVLQDFLNRTNKSDLSRYKITDLQLENLKNMAEDIKSGHEGSQPYPRQPELHEDSPSSSEYSTGSTILPRSTCDDLEHSLHLNVRTEGKPTASEEKKGVISCGKQVFAASTADQADILPSCEEQIVDDFIVSALSSAEFSSPIQVTPLFRSLAAGIPSPQFSESERNFLMKTLGMESPSQKQSAKASQPPPCKRALLQSL 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1923 472 CDD SANT 78 119 IPR001005 -
Prci10g1923 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 73 IPR017930 -
Prci10g1923 472 MobiDBLite consensus disorder prediction 1 22 - -
Prci10g1923 472 Gene3D - 12 74 - -
Prci10g1923 472 ProSiteProfiles Myb-like domain profile. 25 69 IPR001005 -
Prci10g1923 472 Pfam Myb-like DNA-binding domain 26 86 - -
Prci10g1923 472 SMART sant 74 122 IPR001005 -
Prci10g1923 472 SMART sant 22 71 IPR001005 -
Prci10g1923 472 FunFam Transcription factor MYB124 18 74 - -
Prci10g1923 472 CDD SANT 25 69 IPR001005 -
Prci10g1923 472 PANTHER MYB PROTEIN-RELATED 25 231 - -
Prci10g1923 472 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Prci10g1923 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 124 IPR017930 -
Prci10g1923 472 Gene3D - 77 145 - -
Prci10g1923 472 MobiDBLite consensus disorder prediction 308 340 - -
Prci10g1923 472 SUPERFAMILY Homeodomain-like 23 116 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1923 Prci-Chr10 17934916 17941609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1923 64 472 MYB Transcription Factor Family AT1G14350 53.253 1.03e-129 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci10g1923 Myb_DNA-bind_6 9.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1923 K09422 - gmx:100807667 646.736