Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1898 ATGGAGCTTTCAACTGTAAAAACTGAATTCTGCCCAAGAAGCCATAGGTTGTTCATGATGCAAGGCGGGAATATTGACATAAAGTGCATGAAAAGGCGGCGAAGAGACTCATCAGTTGTGCTTCTACAGGGTAATGAGAAGCAAGAGCAACCACGGGGTGGTCAATCAACTGCTACCACTACTACTGTCAAGAGAAGTTCGAGGTTTCGTGGAGTTAGCAGACACAGATGGACAGGGAGGTATGAAGCTCATTTATGGGACAAAGGGACTTGGAATCCAACTCAGAAGAAGAAAGGGAAGCAAGTATATTTGGGAGCTTATGCTGATGAAGAAGCTGCGGCTAGAGCATATGATTTGGCTGCACTCAAGTACTGGGGAATTTCTACATTCATAAACTTCCCTGTATCTAATTACGAGAAAGAGATTGAGATAATGAAAACTATGACAAAAGAAGAATATCTTGCTTCTTTGAGAAGGAGAAGCAGTGGATTTTCTAGAGGAGTATCAAAGTACAGAGGAGTAGCAAGGCACCATCACAATGGAAGATGGGAAGCAAGAATTGGGAGGGTTTTTGGTAACAAGTACCTCTACCTTGGCACTTACAGTACACAAGAAGAGGCTGCTAGAGCATATGATATAGCAGCTATAGAGTACAGAGGCTTGAATGCAGTAACAAACTTTGACTTGAGCACTTATATTAGATGGCTAAGACCAGAAGCCCTTAATACTGCTTCTCAAGAACAAAAGCAAAACCCACAAATTCACCATCTCATGACAAACCCTAACCTCAGCCAAACCAGAGAAATCATTGAGGCATCCAATTTCAATCACAATCCAGTGGAGCAAGACATACCTCAGTATTTGACCCCTTTAAGTCATAGTAATGGTGCCAAGTCATCATCTTCTCCAACAGCATTAGGGCTTCTGCTGAAATCCTCAGTGTTTAGAGATCTAATGCAGAAAAATATGAATCAGACTAAAGGTAAAGAAGAAAAAGAAGATGGAACGGAAAACCCACAAGTAGGAAATGATCGGTTTTCTTACTTATGCTCTTCCAATGGCAATAGAATACCAAATTTACAGTCACCGGAAGAGAAGGCGTTGCCAGTACTGTATCAGAGAACTGGCAGAACTCTATGGAATGAGTGCTTTGAAAGAATCTGA 1164 0.4158 MELSTVKTEFCPRSHRLFMMQGGNIDIKCMKRRRRDSSVVLLQGNEKQEQPRGGQSTATTTTVKRSSRFRGVSRHRWTGRYEAHLWDKGTWNPTQKKKGKQVYLGAYADEEAAARAYDLAALKYWGISTFINFPVSNYEKEIEIMKTMTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGLNAVTNFDLSTYIRWLRPEALNTASQEQKQNPQIHHLMTNPNLSQTREIIEASNFNHNPVEQDIPQYLTPLSHSNGAKSSSSPTALGLLLKSSVFRDLMQKNMNQTKGKEEKEDGTENPQVGNDRFSYLCSSNGNRIPNLQSPEEKALPVLYQRTGRTLWNECFERI 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1898 387 ProSiteProfiles AP2/ERF domain profile. 170 228 IPR001471 GO:0003700|GO:0006355
Prci10g1898 387 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 51 295 - -
Prci10g1898 387 CDD AP2 169 230 IPR001471 GO:0003700|GO:0006355
Prci10g1898 387 PRINTS Ethylene responsive element binding protein signature 210 230 IPR001471 GO:0003700|GO:0006355
Prci10g1898 387 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Prci10g1898 387 MobiDBLite consensus disorder prediction 324 345 - -
Prci10g1898 387 MobiDBLite consensus disorder prediction 42 65 - -
Prci10g1898 387 ProSiteProfiles AP2/ERF domain profile. 68 134 IPR001471 GO:0003700|GO:0006355
Prci10g1898 387 SMART rav1_2 170 234 IPR001471 GO:0003700|GO:0006355
Prci10g1898 387 SMART rav1_2 68 140 IPR001471 GO:0003700|GO:0006355
Prci10g1898 387 FunFam AP2-like ethylene-responsive transcription factor 67 136 - -
Prci10g1898 387 FunFam AP2-like ethylene-responsive transcription factor 169 230 - -
Prci10g1898 387 SUPERFAMILY DNA-binding domain 169 230 IPR016177 GO:0003677
Prci10g1898 387 SUPERFAMILY DNA-binding domain 67 136 IPR016177 GO:0003677
Prci10g1898 387 MobiDBLite consensus disorder prediction 324 339 - -
Prci10g1898 387 Pfam AP2 domain 169 220 IPR001471 GO:0003700|GO:0006355
Prci10g1898 387 Pfam AP2 domain 67 126 IPR001471 GO:0003700|GO:0006355
Prci10g1898 387 Gene3D AP2/ERF domain 169 230 IPR036955 GO:0003700|GO:0006355
Prci10g1898 387 Gene3D AP2/ERF domain 67 136 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1898 Prci-Chr10 17416207 17419431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1898 64 232 AP2-EREBP Transcription Factor Family AT5G57390 71.598 3.25e-84 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Prci10g1898 AP2 8.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1898 - - gmx:100799621 487.263