Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1876 ATGGCGGCGGGTGGAAAACTCTTTGGGGCATCCAACATGACAGCACTCTTTCTCCAAAACGAAAGATTCCCTCCCTCTTCTGACGTTCTCGACTCTCTCTGGCCTCACACCTCTAATCCCACTTTCCCAGGATCAAAATCTGTGATGAATTTTGAGAGACTGGGTGGGTGCAGAGTGACAGACAGGCAATTTCTGCAAGGAGTGGAGAAACAAGAGACAGGGGAGGAAGATTACGAGGTTTGCTTTCATCAAGCTGGGAAGAAGAGGAGGCTCACTAGCGAGCAAGTTCAGTTTCTGGAGAAGAACTTCGAGGTCGAAAACAAGCTTGAACCAGAGAGGAAGGTTCAGCTGGCGAAGGAGCTAGGTTTGCAGCCAAGGCAAGTGGCTATATGGTTCCAGAACAGAAGAGCAAGGTTCAAGACCAAACAGCTCGAGCAAGAATATGGCAAGTTGAAAGCCAGCTATGATAAACTCAAGAGTGACCATGACGATCTTGTCAAAGAGAACGACAAGTTAAAAGAAGAGGTGAAATCCTTAAAAGACAGATTGAATGCGAGAGAGAGAAAGAAAGAAGATTCTCACAAGTCAGGGGCCAATGTAGATCCTGGAGATGCAGAAGCAGTGAATTCCACAGAAGGAGAGCCGCAAGATGATGGAACCAAAGAGGGAGGAGGAGCAACGCCGAAGGGAATAATTACGATGTGGAAGCAGCACCAGGAAGACGCAAATTCATCGGCGAAAAGCGACGTGCTGGATTCGGAGGACACGGCGGAGGCGAACCACCATTCGTCGATGATGCAGCAGGAACCGGCGGATTCGTCGCCGGCCGTGGAAGCGGAAGCTGCAGAGCACTCAGATTTCTCCCAGGACGAAGAAGACGATAACCTGATGATGAGAAGCAACCTCCTGAATCTGGCATGCTTTCCGAAGGTTGAAGAAGATGGATGCTACGCCGGCGATGATCCTCCGGAAGGTTGTTGTAACAATTTTGGATTCCCTGTTGAAGATCACACTTTCTGTTTTTGGCCTTACTGA 1035 0.4918 MAAGGKLFGASNMTALFLQNERFPPSSDVLDSLWPHTSNPTFPGSKSVMNFERLGGCRVTDRQFLQGVEKQETGEEDYEVCFHQAGKKRRLTSEQVQFLEKNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEQEYGKLKASYDKLKSDHDDLVKENDKLKEEVKSLKDRLNARERKKEDSHKSGANVDPGDAEAVNSTEGEPQDDGTKEGGGATPKGIITMWKQHQEDANSSAKSDVLDSEDTAEANHHSSMMQQEPADSSPAVEAEAAEHSDFSQDEEDDNLMMRSNLLNLACFPKVEEDGCYAGDDPPEGCCNNFGFPVEDHTFCFWPY 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1876 344 MobiDBLite consensus disorder prediction 182 294 - -
Prci10g1876 344 Pfam Homeodomain 87 140 IPR001356 GO:0003677
Prci10g1876 344 SUPERFAMILY Homeodomain-like 78 144 IPR009057 -
Prci10g1876 344 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Prci10g1876 344 MobiDBLite consensus disorder prediction 182 199 - -
Prci10g1876 344 CDD homeodomain 87 143 IPR001356 GO:0003677
Prci10g1876 344 Gene3D - 82 149 - -
Prci10g1876 344 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Prci10g1876 344 Coils Coil 141 189 - -
Prci10g1876 344 MobiDBLite consensus disorder prediction 242 259 - -
Prci10g1876 344 FunFam Homeobox-leucine zipper protein HAT5 80 144 - -
Prci10g1876 344 Pfam Homeobox associated leucine zipper 142 183 IPR003106 GO:0006355|GO:0043565
Prci10g1876 344 SMART HOX_1 85 146 IPR001356 GO:0003677
Prci10g1876 344 PRINTS Lambda-repressor HTH signature 122 138 IPR000047 GO:0003677
Prci10g1876 344 PRINTS Lambda-repressor HTH signature 113 122 IPR000047 GO:0003677
Prci10g1876 344 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 73 270 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1876 Prci-Chr10 16798018 16800215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1876 87 187 Homeobox Transcription Factor Family AT3G01470 67.327 1.91e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci10g1876 Homeodomain 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1876 K09338 - qsa:O6P43_025407 327.791