Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1843 ATGGATCCAGGAGCTATGATGAACGAGGGTTCATTTGCGAATGGTGGAGCTAATACGGCGCCGTATAACCTGGCCGATATCTGGCAGCTCCCGATGAATGTCGGTGCGGGTCTCGGGGATTCCGGAGGCGGGTTGGGGCTGAGGAGGCCGCAGTTTGGGCATAATTTGGGGCCGCCGCTGTTCGGTGATTTTCCGGGTCATACGAATCGGGATGTACCCAGCAATGATCAAGTCCGCTCGGAGCAGAGAGGGAATAATAATAATAATAATAATAATAATAATCATGGAGTCAACAATAGGAAGCGACATGATTCCGAGGATGAGTCCACCAAAGGCGTCTCCACCAGTAATGGCGGCAATGGCGTGAATGATGGTGGTGAAGGAAAACGGCTTAAAGCTTTAGGGAATAGGAATGAGAGTCGAGAGACTAAAGCTGAAGCAGAGCCCAGTTCAGGAAAGCCTGCGGAGCAAAATAACCAGCTACCTCCGGAGCCTCCTAAGCAAGATTACATTCATGTTCGAGCGAGAAGAGGTCAAGCTACTGATAGCCACAGTCTAGCAGAAAGAGCTAGAAGGGAGAAGATAAGTGAGAGGATGAAAATTCTTCAGGATTTGGTCCCTGGTTGTAATAAGGTTATTGGGAAGGCACTTGTCCTTGATGAGATTATAAATTATATCCAATCACTACAGCGCCAAGTTGAGTTCCTGTCTATGAAACTTGAAGCTGTAAATTCAAGAATGAACCCTGGCATCGAAGTCTTTCCTCCTAAAGATTTTGGTCCACAATCATTTGAAACAGCTGGCATGGCATTTGGCTCACAAGCTACAAGAGAGTATAGCCGGGGTTCGTCGCCGGAGTGGTTACATATGCAGGTAGGTGGTGGTTTTGAAAGAACGTCTTAA 903 0.4751 MDPGAMMNEGSFANGGANTAPYNLADIWQLPMNVGAGLGDSGGGLGLRRPQFGHNLGPPLFGDFPGHTNRDVPSNDQVRSEQRGNNNNNNNNNNHGVNNRKRHDSEDESTKGVSTSNGGNGVNDGGEGKRLKALGNRNESRETKAEAEPSSGKPAEQNNQLPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNPGIEVFPPKDFGPQSFETAGMAFGSQATREYSRGSSPEWLHMQVGGGFERTS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1843 300 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 229 IPR011598 GO:0046983
Prci10g1843 300 MobiDBLite consensus disorder prediction 130 149 - -
Prci10g1843 300 SMART finulus 185 235 IPR011598 GO:0046983
Prci10g1843 300 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 77 270 IPR024097 GO:0006355
Prci10g1843 300 Pfam Helix-loop-helix DNA-binding domain 183 230 IPR011598 GO:0046983
Prci10g1843 300 Coils Coil 226 246 - -
Prci10g1843 300 Gene3D - 176 250 IPR036638 GO:0046983
Prci10g1843 300 MobiDBLite consensus disorder prediction 56 168 - -
Prci10g1843 300 MobiDBLite consensus disorder prediction 70 96 - -
Prci10g1843 300 FunFam Basic helix-loop-helix transcription factor 176 248 - -
Prci10g1843 300 CDD bHLH_AtBPE_like 169 254 - -
Prci10g1843 300 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 248 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1843 Prci-Chr10 15099028 15102159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1843 1 258 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 53.558 2.24e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci10g1843 HLH 2.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1843 - - qsa:O6P43_025379 404.06