Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1835 ATGGACCAACAAATTCTTGTGGATGAAAACTTTCCACTCTTCTCCAAATCTCATAAACCCTCGAAAAACAACTTGCCAGCTGCCTCAACTGCTACAGCCACCACCGCTGCTGCCGCCAAAGACATTAACTTTGATAGCCAGCACCTTGGAAAGTTAGATGATACCGATCTTGATTACACCAATCCCACTACTTTCGCAGAGCTTGGACTTGCGGAATGGGCAGTGAAGACTTGCAAGGAGCTCGCAATGCGCAAGCCTCGACGGGTGCAATTAAATTGCATCCCGAAGATTCTAGATGGCCGCCATGTGCTTGGCATTGATGAGACTGGAAGTGGTAAGACTGCGGCATTTGCTCTACCAATTCTTCACCGATTGGGTGAGCATCCTTTTGGGGTTTTTGCCTTGGTTTTGACGCCAACGAGGGAGTTGGCTTACCAACTGGCGGAGCAATTTAGGGCATTGGGTTCATGCTTGCATGTGCGGATAGCCGTGGTGGTTGGAGGGATGGATATGTTGGAACAAGCCAAGATTTTAACATCCAGGCCGCATGTTGTGATTGCCACACCAGGAAGGATCAAGGTTTTGCTTGAGGATAATCCTGATATTCCTCGTTTTTCTAGAACTAAGTTCCTTGTATTAGATGAAGCAGATCGAGTTCTTGATGTTGGCTTTCAGGAGGATTTGAAACTGATCTTTCAGTGCTTACCAGAAAATCGGCAAAACCTATTCTTTTCAGCAACTACGACAAGTAATCTACAGAAGCTGCGTGAGCGTTACCAAAACAAGCTCTATGTCTATGAGGCCTATGAAGGCCTGAAAACAGTTGAGACGCTTAAGCAACAGATTATATTTGTCCCTAACAAAGTGAAGGAGGTTTATCTGATGCATATGTTCCAAATGGAAGATATGGGCATTCGCTCTGCCATTGTTTTTTTCTCTACATGCAGGGATTGTCATCGTTTAAGTTTAATGCTAGAAGTACTTGATCAGGAAGCTGCAGCTCTCTATTCATTCAAATCACAGGCTCAGAGACTTGAAGCACTTAATCAATTTAAATCAGGAAAGGTTTCTATACTGCTTGCAACTGATGTTGCCAGCCGAGGTTTGGACATTCCTACAGTTGATCTAGTCATCAATTATGATGTCCCAAGGTTCCCTAGGGATTATGTTCATCGTGTTGGCCGAACTGCAAGAGCAGGTAGAGGAGGACTGGCAGTGAGCATTGTTACCCAGAATGACATTCATCTCATCCATGAAGTAGAAGCTCTTCTTGAAAAGCAACTAGAGTTGGTCGAATACAAAGAGAACGAAGTGCTTTCTCTGATGAAAAAGGTTTTCAGCGCTAAAAATGTGGCAGAAATGAAAATGTTGGATGATGGCTTTGAGGAGAAAGCACAAGAGCGGAAAAGGCAGAAACTGAAAATGTTGTCAGAAAATGGATTATTAAAGAAAAGGAGCAAAAAGAGGAAAAGAAATAAAGGCCTCAAGGAAGAAGGAATAAAACATGAAAAGGAAGTGGAAACATTATCAGATAAAGATCACAGAATAAAAAGAGTAAGAAGAGGAAGTGAATTATAA 1578 0.4278 MDQQILVDENFPLFSKSHKPSKNNLPAASTATATTAAAAKDINFDSQHLGKLDDTDLDYTNPTTFAELGLAEWAVKTCKELAMRKPRRVQLNCIPKILDGRHVLGIDETGSGKTAAFALPILHRLGEHPFGVFALVLTPTRELAYQLAEQFRALGSCLHVRIAVVVGGMDMLEQAKILTSRPHVVIATPGRIKVLLEDNPDIPPXFSRTKFLVLDEADRVLDVGFQEDLKLIFQCLPENRQNLFFSATTTSNLQKLRERYQNKLYVYEAYEGLKTVETLKQQIIFVPNKVKEVYLMHMLXQMEDMGIRSAIVFFSTCRDCHRLSLMLEVLDQEAAALYSFKSQAQRLEALNQFKSGKVSILLATDVASRGLDIPTVDLVINYDVPRFPRDYVHRVGRTARAGRGGLAVSIVTQNDIHLIHEVEALLEKQLELVEYKENEVLSLMKKVFSAKNVAEMKMLDDGFEEKAQERKRQKLKMLSENGLLKKRSKKRKRNKGLKEEGIKHEKEVETLSDKDHRIKRVRRGSEL 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1835 527 SMART helicmild6 321 402 IPR001650 -
Prci10g1835 527 CDD SF2_C_DEAD 279 411 - -
Prci10g1835 527 Gene3D - 273 455 IPR027417 -
Prci10g1835 527 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 56 507 - -
Prci10g1835 527 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 301 441 IPR001650 -
Prci10g1835 527 Pfam DEAD/DEAH box helicase 88 256 IPR011545 GO:0003676|GO:0005524
Prci10g1835 527 Coils Coil 494 514 - -
Prci10g1835 527 Gene3D - 29 267 IPR027417 -
Prci10g1835 527 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 94 267 IPR014001 -
Prci10g1835 527 Pfam Helicase conserved C-terminal domain 308 402 IPR001650 -
Prci10g1835 527 MobiDBLite consensus disorder prediction 474 501 - -
Prci10g1835 527 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 213 221 IPR000629 -
Prci10g1835 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 419 IPR027417 -
Prci10g1835 527 SMART ultradead3 82 282 IPR014001 -
Prci10g1835 527 CDD DEADc_DDX49 65 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1835 Prci-Chr10 14971244 14976674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1835 64 415 Eukaryotic Initiation Factors Gene Family AT3G13920 33.705 2.18e-54 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1835 K14778 - gmx:100804060 749.199