Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1828 ATGGAGGGAACTGAAATTGATGCAAGAAGTGGATTCTGCAAATCCAACTCCATCTTCTACAATAAACGGAAGCCACTGCCGCTTCCTCAAAAGTACTCACTCGACGTCACCGCTTTCATCTCCTCCCGCGCCCACCACGGCAAGCTTGGTTTCATCGACGCCGCCACTGGCCGCCACTTCACCTTCCACCAACTCTGGCAGGCTGTCGATGCCGTCGCCACCTCTCTCTCTGACATCGGTATTCGAAAGGGCCACGTCGTCCTCCTTCTTTCCCCCAATTCCATTTACTTTCCCGTCGTCTGTCTCGCTGTCATGTCCCTTGGGGCTATCATCACCACCCGCGAAATCTCCAAGAAAATCTCCGATTCCAAGCCTTCCCTTGCCTTCACGATTCGGCCCCTACTAGCCAAAATCACCGCAATTTCAAATGTACCGATCGTTCTCATGGAGGAAGACGAAGGCGCCCCCATCACAGAGCCTAAAATCGTGACCACGCTGGGCGAGATGATGAAGACGGAGCCCCGTGCTAGCCAAGTCAGGGATCGAGTTTACCAAGATGATACTGCGACTTTACTGTATTCGTCTGGTACCACGGGTCCAAGTAAAGGCGTGGTCTCGACGCACCGGAATCTAATGGCAATGGTCCAGATATTTTCGAGTCGACTCAATATGGATAAGGAGGAGACTTTCATATGCATTGTCCCTATGTTCCATATATACGGTCTGGTGGTGTTCGTAACTGGCCTTCTGGCTGCAGGATCGACGACAGTGGTGCTGTCCAAGTACGACATGGACGATATGCTGGCGATCCAGCAGTACCGTGTGACGTACCTGCCGCTAGTGCCGCCTATATTGGTGGCGATGATAAATGGGGCGGATGCGATAAAGGCGAAGTACGACTTGGGGTCACTGCATTCGGTGGTGTCGGGTGGGGCTCCACTGAGCAAGGGGGTGATAGAGGGCTTTGTGGACAAGTTCCCGAACGTCACAATTCTCCAGGGTTACGGGTTGACCGAATCCACGGGAGTCGGGGTATCCACGGACTCACTCGAGGAGAGTCGGAGGTACGGTACGGCGGGGCTGTTGTCACCGGGCATGCAGGCCAAGGTCGTTGATCCTGAAACTGGAAAGGCTTTGCCGGCTAATCGGACCGGTGAGCTCTGGCTCAGAGGGCCCACTATCATGAAAGGTTATTTCAGTAATGAGGAAGCAACCACCTCAACCCTTGATTCAGAGGGATGGTTGAGGACTGGGGATATTTGCTACATTGATGGCGACGGATATATTTTCGTTGTGGATAGGTTGAAAGAGCTTATTAAATACAAGGGATATCAGGTCCCCCCAGCAGAACTAGAAGCCTTGTTGCTTACTCATCCTGCAATTTCAGATGCAGCTGTCATACCGTTCCCAGATAAGGAGGCTGGGCAGTATCCAATGGCATACGTAGTGAGGAAAAGTGGAAGTCATGTATCTGAAAAGGAAATCATGGATTTTGTGGCAGCACAGGCTGCTCCATACAAAAGAATTCGAAGAGTGGCATTTATTTCTTCAATACCAAAGAACGCATCAGGAAAAATCATCAGGAAGGATCTCATCAAGCTCGCCACATCTAAACTTTGA 1620 0.513 MEGTEIDARSGFCKSNSIFYNKRKPLPLPQKYSLDVTAFISSRAHHGKLGFIDAATGRHFTFHQLWQAVDAVATSLSDIGIRKGHVVLLLSPNSIYFPVVCLAVMSLGAIITTREISKKISDSKPSLAFTIRPLLAKITAISNVPIVLMEEDEGAPITEPKIVTTLGEMMKTEPRASQVRDRVYQDDTATLLYSSGTTGPSKGVVSTHRNLMAMVQIFSSRLNMDKEETFICIVPMFHIYGLVVFVTGLLAAGSTTVVLSKYDMDDMLXAIQQYRVTYLPLVPPILVAMINGADAIKAKYDLGSLHSVVSGGAPLSKGVIEGFVDKFPNVTILQGYGLTESTGVGVSTDSLEESRRYGTAGLLSPGMQAKVVDPETGKALPANRTGELWLRGPTIMKGYFSNEEATTSTLDSEGWLRTGDICYIDGDGYIFVVDRLKELIKYKGYQVPPAELEALLLTHPAISDAAVIPFPDKEAGQYPMAYVVRKSGSHVSEKEIMDFVAAQAAPYKRIRRVAFISSIPKNASGKIIRKDLIKLATSKL 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1828 540 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 12 534 - -
Prci10g1828 540 FunFam Long-chain-fatty-acid--CoA ligase FadD 20 437 - -
Prci10g1828 540 FunFam 4-coumarate--CoA ligase 2 438 539 - -
Prci10g1828 540 Gene3D - 17 437 IPR042099 -
Prci10g1828 540 CDD 4CL 28 532 - -
Prci10g1828 540 ProSitePatterns Putative AMP-binding domain signature. 191 202 IPR020845 -
Prci10g1828 540 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
Prci10g1828 540 Pfam AMP-binding enzyme 45 442 IPR000873 -
Prci10g1828 540 SUPERFAMILY Acetyl-CoA synthetase-like 45 538 - -
Prci10g1828 540 Gene3D - 438 539 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1828 Prci-Chr10 14780226 14783307 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1828 6 540 Monolignol Biosynthesis Gene Families AT1G20500 62.936 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1828 K10526 - qsa:O6P43_016337 825.083