Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1808 ATGAAGAGGTCTAGAGACGATGGTTATGTGAGCTCTCAACTCAAACGGCCCATGGTGTCTTCACGCGGGGATGCCCCAGGGCAACCCCAGATGATTGGTGGAGGTGCTCAGAAACTAACAACTAATGATGCCTTACTCTATCTCAAGGCTGTCAAGGAAATGTTTCATGATAAGAGGGAAAAATATGACGACTTTCTGGAAGTCATGAAAAATTTCAAGGCGCAAAGAATTGATACTGCTGGTGTCATAGCAAGAGTGAAGGAACTGTTTAAAGGGCACAAGGATCTAATTTTGGGATTCAACACCTTCTTGCCGAAAGGATATGAAATCACACTTCCACTGGAGGATGAACAACCTCCTCAAAAGAAGCCCGTTGAGTTTGAAGAAGCTATAAATTTTGTGAACAAAATTAAGGCTCGGTTTCAGGGCGATGATCATGTTTACAAGTCTTTTCTAGACATATTGAATATGTACAGAAAGGAGAACAAGTCTATTACTGAGGTTTATCATGAGGTTGCTGCTCTTTTCCAAGACCACCAAGATCTGCTTGTTGAGTTCACTCACTTTCTTCCTGATGCTTCAGCAGCAGCTTCTGCTCATTATGCTCAATCTGCTCGGAACTCTTTGCTTCGTGATAGGAGCTCTGCAATGCCAGCAATACGGCAAATGCATGTTGACAAGAGGGAAAGGACCATAGCCTCTCATGATCGTGAACATAGTGTTGATCATCCTGATCTGGATGATAGAGGTTTTATGAGGTCAGAAAAGGAGCTGAAGAGGCGTGGTGAGAAGGAAAAGGACCGTAGAGAAGATAGAGATAGGAAAGAACGAGATCGGGATGATAGAGATTATGAGCATGATAATAGTCGGGACTACAATATGAAGAATTTCCCCCACAGACCCAAAAATGTTGGTAGGGGCGATGATTTTGGTGCTGAACCTCTGCATCAAGGAGGTGATGCTGATGAACATTTTGGCCTGCGCAGTATGTCATCTCCTTGTGATGATAAAAGTTCTGTGAAAAGTATGTACAGTCAAGAGTTTGCTTTCTGTGATAAAGTCAAGGAGAAATTACGGAACCCTGATGATTATCAGGAATTTTTGAAGTGCCTGCATATCTATAGCAGGGAAATAATTACGCGACAGGAATTGCAGTCATTGGTGGCTGATTTACTCGGAAAATATCCTGACCTTATGGAGGGGTTTAATGAATTTTTGGCAAGATGTGAGAAGAATGATGGATTCCTTGCTGGTGTAATGAATAAAAAATCCTTATGGAATGAAGGACATACATCAAAATCTGTGAAGGCAGAAGACAGGGATAGAGATAGAGATCGTGATCGTGGTGGGGATGATGAGGTTAAAGAAAGGGATCGTGAATACCGAGAAAGGGACAGACCTGCTGCCATTGCCAACAAGGATGTTTCAGGTTCTAGGATGTCTATGTTATCCTCCAAGGATAAGTATATGTACAAAGCTATAAATGAGTTAGACCTTTCTAACTGTGAGCGATGCACTCCTAGTTACCGGCTCCTACCAAAACATTACCCGATACCTATGGCTAGCCAGAGAACAGAGCTTGGTGCTGTAGTGTTGAATGATCATTGGGTGTCTGTGACATCTGGAAGTGAAGATTATTCTTTTAAACACATGCGCAAAAACCAGTATGAAGAGAGCTTGTTTAGATGTGAAGATGACAGATTTGAGCTTGATATGTTGTTAGAGTCTGTGAATGTGACTACAAAGCGAGTAGAAGAGCTCTTAGAAAAGATCAATAATAATATAATCAAGGCAGAAAGTCCAATCCGAATTGAGGAGCACTTAACAGCTTTAAATCTAAGGTGCATTGAACGTTTATATGGTGACCATGGGCTTGATGTAATGGAAGTGTTAAGAAAGAATGCGCCTTTAGCTTTGCCAGTTATACTGACCCGCTTGAAGCAGAAACAGGAAGAGTGGGCTAGGTGTCGTGCAGATTTTAATAAAGTGTGGGCTGAAATATATGCCAAGAACTATCACAAATCCCTTGATCATCGGAGCTTCTACTTTAAGCAACAAGATATGAAAAGCTTGAGCACAAAAGCCTTGTTGGCAGAAATTAAAGAAATTAGTGAGAAGAAACGTAAAGAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAATAGACGACCCATTCTTCCAAATTTGGAATATGAGTTTTCTGATCCAGATATTCATGAAGATTTGTATCAGCTCATAAAATATTCATGCGGAGAAGTTTGTACAACTGAACAGTTAGATAAAGTTATGAAGATTTGGACAACATTTTTAGAGCCCATGCTTGGTGTTCCTTCTCGACCCCAAGGTGCTGAGGATACAGAGGATGTTGTCAAGACAAAGAACAATTCCGTCAAAAGTGGTGCTGCAAGTGTTGCAGAGAGTAATGGTAGTCCAGGTAGTGGTGCCACCATAATGAATTCTAAACAATTAAGTACTTCTAGAAATGAGGATGAGAGTATTCCGTTAGAACTGTCAAACTCTTGCAAAGCGTGGCAAATGAATGGAGATGGTGGGGTTAAAGAAGACAACTGTATTGATACAGACCATACTACTCGGAAGACTGAAACCTTGGGCAGCAGTACACAGCTTTGTAAAATGCAAGCTATTGCATCCATGCCTGATGGAGGATCAGGAATCAATAAGCAAGAGCATCCTAGTGATCGGTTAGTGAATGCTAGGATCTTGCTTGCCTCAGGAATGGAGCACAGTAATGGAAGAACAAGCATTGATAATGCATCAGGGCTTACTGCTACTCAATCTAGACTCGCTGTTGAGGGAGGACTTAATTTACCTTCATCAGAGGGTGGCGATTCTACTAGACTAGGAACATCTACGAATGGGACCCTTACTGGAGGCACCAAAGTTCTAAGATACGTAGAAGAATCAGTTGGACACTTAAAGGGTGAAAGAGAAGAGGGTGAATTATCTCCGAATGGAGATTTTGAGGAGGATAACTCTGCAGTTTACAGAGATGCTGGTTTGGAGGCAATGAGTAAAGGAAAGGATAGTGGTATGATTCAACAATACCAAAATAGACATGGAGAAGAAATTTGTGGTGAAGCAGGAGGAGAAAATGATGCTGATGCTGATGATGAAGGTGAAGAAAGCCATCAAAGGTCATTAGAGGACAGTGAAAATGCTTCTGAAAATGGAGATGTTTCTGGTAGTGAGTCTGTTGATGGTGAGTGTTCTCGAGAAGAGCATGAAGATGGTGAACACAAGGCTGAGAGTGAAGGCGAAGCTGAAGGGATGGCTGATGCCAATGATGTTGAAGGAGATGGATCTCTATTGCCATTTTCAGAACGTTTTCTACTAACTGTAAAGCCTCTGGCAAAATATGTTCCCACAGCGTTGCATGAGAAAGAAGGGAATTCCCAGATTTTTTATGGGAATGACTCCTTTTATGTGCTTTTCAGACTTCACCAGACATTATATGAGAGGATACAATCAGCAAAGATCAACTCTTCATCTGCTGAAAGAAGGTGGAAGGCTTCAAATGAAACAAATTCTACTGATCAGTATGGCAGGTTCATGAATGCCCTTTACAGTTTACTGGATGGTTCTTCTGACAACACAAAATTTGAGGATGACTGCAGGGCTATTATTGGAACTCAATCTTATGTCTTATTCACTTTAGACAAGCTGATATATAGACTAGTTAAACAGCTTCAAGCTGTTGCAACTGATGAGATGGATAACAAGCTTCTCCAACTTTATACATATGAGAAATCAAGAAAACCGGGAAGATTTGTTGACAGAGTTTATCATGAAAATGCCCGTGTTCTTCTTCATGATGAGAATTTATATCGAATTGAATGTTCATCTACACCAACCCGATTATCTATTCAATTGATGGACTATGGACATGATAAGCCTGAATTGACTGCTGTGTCCATGGACCCAAATTTTTCAGCCTATCTGCACAATGACTTCCTCTCTGTTATACCTGACAAAAAGGAAAAGTCAGGGATTTTCCTGAAGAGTTTTGTCTATTCTGCCTTTGTCAGGAATAAACGCAGATATGTATGTCCTGATGAACACTCAAGCCAGGCCTTGGAAGGACTACAAATTAGTAATGGCCTGGAGTGTAAAATAGCTTGCAGTTCGTCCAAGGTTTCATATGTTCTAGACACCGAGGACTATTTGTTTCGGATGAGAAGGAAAAGAAAAACTTTGCATCAGAACAGTTCATGCCATGAACAGGCAAAGTCATCAAACACTTGTTCAAGCAGAGCACAGCGGTTTCGCAGATTGTTTCCCATTACATGA 4308 0.4111 MKRSRDDGYVSSQLKRPMVSSRGDAPGQPQMIGGGAQKLTTNDALLYLKAVKEMFHDKREKYDDFLEVMKNFKAQRIDTAGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFEEAINFVNKIKARFQGDDHVYKSFLDILNMYRKENKSITEVYHEVAALFQDHQDLLVEFTHFLPDASAAASAHYAQSARNSLLRDRSSAMPAIRQMHVDKRERTIASHDREHSVDHPDLDDRGFMRSEKELKRRGEKEKDRREDRDRKERDRDDRDYEHDNSRDYNMKNFPHRPKNVGRGDDFGAEPLHQGGDADEHFGLRSMSSPCDDKSSVKSMYSQEFAFCDKVKEKLRNPDDYQEFLKCLHIYSREIITRQELQSLVADLLGKYPDLMEGFNEFLARCEKNDGFLAGVMNKKSLWNEGHTSKSVKAEDRDRDRDRDRGGDDEVKERDREYRERDRPAAIANKDVSGSRMSMLSSKDKYMYKAINELDLSNCERCTPSYRLLPKHYPIPMASQRTELGAVVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINNNIIKAESPIRIEEHLTALNLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDMKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPILPNLEYEFSDPDIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFLEPMLGVPSRPQGAEDTEDVVKTKNNSVKSGAASVAESNGSPGSGATIMNSKQLSTSRNEDESIPLELSNSCKAWQMNGDGGVKEDNCIDTDHTTRKTETLGSSTQLCKMQAIASMPDGGSGINKQEHPSDRLVNARILLASGMEHSNGRTSIDNASGLTATQSRLAVEGGLNLPSSEGGDSTRLGTSTNGTLTGGTKVLRYVEESVGHLKGEREEGELSPNGDFEEDNSAVYRDAGLEAMSKGKDSGMIQQYQNRHGEEICGEAGGENDADADDEGEESHQRSLEDSENASENGDVSGSESVDGECSREEHEDGEHKAESEGEAEGMADANDVEGDGSLLPFSERFLLTVKPLAKYVPTALHEKEGNSQIFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERRWKASNETNSTDQYGRFMNALYSLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYRLVKQLQAVATDEMDNKLLQLYTYEKSRKPGRFVDRVYHENARVLLHDENLYRIECSSTPTRLSIQLMDYGHDKPELTAVSMDPNFSAYLHNDFLSVIPDKKEKSGIFLKSFVYSAFVRNKRRYVCPDEHSSQALEGLQISNGLECKIACSSSKVSYVLDTEDYLFRMRRKRKTLHQNSSCHEQAKSSNTCSSRAQRFRRLFPIT 1435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1808 1435 MobiDBLite consensus disorder prediction 1072 1094 - -
Prci10g1808 1435 MobiDBLite consensus disorder prediction 1030 1105 - -
Prci10g1808 1435 SUPERFAMILY PAH2 domain 119 192 IPR036600 GO:0006355
Prci10g1808 1435 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Prci10g1808 1435 MobiDBLite consensus disorder prediction 430 477 - -
Prci10g1808 1435 MobiDBLite consensus disorder prediction 977 998 - -
Prci10g1808 1435 Pfam Sin3 family co-repressor 503 594 IPR013194 -
Prci10g1808 1435 PANTHER SIN3B-RELATED 37 1285 IPR039774 GO:0003714
Prci10g1808 1435 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Prci10g1808 1435 Pfam Paired amphipathic helix repeat 362 406 IPR003822 GO:0006355
Prci10g1808 1435 Pfam Paired amphipathic helix repeat 146 190 IPR003822 GO:0006355
Prci10g1808 1435 MobiDBLite consensus disorder prediction 1045 1059 - -
Prci10g1808 1435 MobiDBLite consensus disorder prediction 794 832 - -
Prci10g1808 1435 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Prci10g1808 1435 Coils Coil 574 594 - -
Prci10g1808 1435 ProSiteProfiles PAH domain profile. 340 409 IPR003822 GO:0006355
Prci10g1808 1435 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Prci10g1808 1435 FunFam Paired amphipathic helix protein Sin3 43 105 - -
Prci10g1808 1435 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Prci10g1808 1435 FunFam Paired amphipathic helix SIN3-like protein 122 193 - -
Prci10g1808 1435 Pfam C-terminal domain of Sin3a protein 1141 1395 IPR031693 -
Prci10g1808 1435 SUPERFAMILY PAH2 domain 340 407 IPR036600 GO:0006355
Prci10g1808 1435 SMART hdac_interact2seq4b 501 601 IPR013194 -
Prci10g1808 1435 MobiDBLite consensus disorder prediction 432 470 - -
Prci10g1808 1435 MobiDBLite consensus disorder prediction 231 338 - -
Prci10g1808 1435 MobiDBLite consensus disorder prediction 231 323 - -
Prci10g1808 1435 FunFam Paired amphipathic helix protein SIN3 338 411 - -
Prci10g1808 1435 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Prci10g1808 1435 MobiDBLite consensus disorder prediction 940 962 - -
Prci10g1808 1435 Gene3D Paired amphipathic helix 338 411 IPR036600 GO:0006355
Prci10g1808 1435 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1808 Prci-Chr10 14483981 14494524 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1808 33 142 WRKY Transcription Factor Family AT4G12020 50.909 1.78e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Prci10g1808 Sin3a_C 2.8e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1808 K11644 - mnt:21394293 2097.01