Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1806 ATGAAGAGGTCTAGAGACGATGGTTATGTGAGCTCTCAACTCAAACGGCCCATGGTGTCTTCACGCGGGGATGCCCCAGGGCAACCCCAGATGATTGGTGGAGGTGCTCAGAAACTAACAACTAATGATGCCTTACTCTATCTCAAGGCTGTCAAGGAAATGTTTCATGATAAGAGGGAAAAATATGACGACTTTCTGGAAGTCATGAAAAATTTCAAGGCGCAAAGAATTGATACTGCTGGTGTCATAGCAAGAGTGAAGGAACTGTTTAAAGGGCACAAGGATCTAATTTTGGGATTCAACACCTTCTTGCCGAAAGGATATGAAATCACACTTCCACTGGAGGATGAACAACCTCCTCAAAAGAAGCCCGTTGAGTTTGAAGAAGCTATAAATTTTGTGAACAAAATTAAGGCTCGGTTTCAGGGCGATGATCATGTTTACAAGTCTTTTCTAGACATATTGAATATGTACAGAAAGGAGAACAAGTCTATTACTGAGGTTTATCATGAGGTTGCTGCTCTTTTCCAAGACCACCAAGATCTGCTTGTTGAGTTCACTCACTTTCTTCCTGATGCTTCAGCAGCAGCTTCTGCTCATTATGCTCAATCTGCTCGGAACTCTTTGCTTCGTGATAGGAGCTCTGCAATGCCAGCAATACGGCAAATGCATGTTGACAAGAGGGAAAGGACCATAGCCTCTCATGATCGTGAACATAGTGTTGATCATCCTGATCTGGATGATAGAGGTTTTATGAGGTCAGAAAAGGAGCTGAAGAGGCGTGGTGAGAAGGAAAAGGACCGTAGAGAAGATAGAGATAGGAAAGAACGAGATCGGGATGATAGAGATTATGAGCATGATAATAGTCGGGACTACAATATGAAGAATTTCCCCCACAGACCCAAAAATGTTGGTAGGGGCGATGATTTTGGTGCTGAACCTCTGCATCAAGGAGGTGATGCTGATGAACATTTTGGCCTGCGCAGTATGTCATCTCCTTGTGATGATAAAAGTTCTGTGAAAAGTATGTACAGTCAAGAGTTTGCTTTCTGTGATAAAGTCAAGGAGAAATTACGGAACCCTGATGATTATCAGGAATTTTTGAAGTGCCTGCATATCTATAGCAGGGAAATAATTACGCGACAGGAATTGCAGTCATTGGTGGCTGATTTACTCGGAAAATATCCTGACCTTATGGAGGGGTTTAATGAATTTTTGGCAAGATATGGATTCCTTGCTGGTGTAATGAATAAAAAATCCTTATGGAATGAAGGACATACATCAAAATCTGTGAAGGCAGAAGACAGGGATAGAGATAGAGATCGTGATCGTGGTGGGGATGATGAGGTTAAAGAAAGGGATCGTGAATACCGAGAAAGGGACAGACCTGCTGCCATTGCCAACAAGGATGTTTCAGGTTCTAGGATGTCTATGTTATCCTCCAAGGATAAGTATATGTACAAAGCTATAAATGAGTTAGACCTTTCTAACTGTGAGCGATGCACTCCTAGTTACCGGCTCCTACCAAAACATTACCCGATACCTATGGCTAGCCAGAGAACAGAGCTTGGTGCTGTAGTGTTGAATGATCATTGGGTGTCTGTGACATCTGGAAGTGAAGATTATTCTTTTAAACACATGCGCAAAAACCAGTATGAAGAGAGCTTGTTTAGATGTGAAGATGACAGATTTGAGCTTGATATGTTGTTAGAGTCTGTGAATGTGACTACAAAGCGAGTAGAAGAGCTCTTAGAAAAGATCAATAATAATATAATCAAGGCAGAAAGTCCAATCCGAATTGAGGAGCACTTAACAGCTTTAAATCTAAGGTGCATTGAACGTTTATATGGTGACCATGGGCTTGATGTAATGGAAGTGTTAAGAAAGAATGCGCCTTTAGCTTTGCCAGTTATACTGACCCGCTTGAAGCAGAAACAGGAAGAGTGGGCTAGGTGTCGTGCAGATTTTAATAAAGTGTGGGCTGAAATATATGCCAAGAACTATCACAAATCCCTTGATCATCGGAGCTTCTACTTTAAGCAACAAGATATGAAAAGCTTGAGCACAAAAGCCTTGTTGGCAGAAATTAAAGAAATTAGTGAGAAGAAACGTAAAGAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAATAGACGACCCATTCTTCCAAATTTGGAATATGAGTTTTCTGATCCAGATATTCATGAAGATTTGTATCAGCTCATAAAATATTCATGCGGAGAAGTTTGTACAACTGAACAGTTAGATAAAGTTATGAAGATTTGGACAACATTTTTAGAGCCCATGCTTGGTGTTCCTTCTCGACCCCAAGGTGCTGAGGATACAGAGGATGTTGTCAAGACAAAGAACAATTCCGTCAAAAGTGGTGCTGCAAGTGTTGCAGAGAGTAATGGTAGTCCAGGTAGTGGTGCCACCATAATGAATTCTAAACAATTAAGTACTTCTAGAAATGAGGATGAGAGTATTCCGTTAGAACTGTCAAACTCTTGCAAAGCGTGGCAAATGAATGGAGATGGTGGGGTTAAAGAAGACAACTGTATTGATACAGACCATACTACTCGGAAGACTGAAACCTTGGGCAGCAGTACACAGCTTTGTAAAATGCAAGCTATTGCATCCATGCCTGATGGAGGATCAGGAATCAATAAGCAAGAGCATCCTAGTGATCGGTTAGTGAATGCTAGGATCTTGCTTGCCTCAGGAATGGAGCACAGTAATGGAAGAACAAGCATTGATAATGCATCAGGGCTTACTGCTACTCAATCTAGACTCGCTGTTGAGGGAGGACTTAATTTACCTTCATCAGAGGGTGGCGATTCTACTAGACTAGGAACATCTACGAATGGGACCCTTACTGGAGGCACCAAAGTTCTAAGATACGTAGAAGAATCAGTTGGACACTTAAAGGGTGAAAGAGAAGAGGGTGAATTATCTCCGAATGGAGATTTTGAGGAGGATAACTCTGCAGTTTACAGAGATGCTGGTTTGGAGGCAATGAGTAAAGGAAAGGATAGTGGTATGATTCAACAATACCAAAATAGACATGGAGAAGAAATTTGTGGTGAAGCAGGAGGAGAAAATGATGCTGATGCTGATGATGAAGGTGAAGAAAGCCATCAAAGGTCATTAGAGGACAGTGAAAATGCTTCTGAAAATGGAGATGTTTCTGGTAGTGAGTCTGTTGATGGTGAGTGTTCTCGAGAAGAGCATGAAGATGGTGAACACAAGGCTGAGAGTGAAGGCGAAGCTGAAGGGATGGCTGATGCCAATGATGTTGAAGGAGATGGATCTCTATTGCCATTTTCAGAACGTTTTCTACTAACTGTAAAGCCTCTGGCAAAATATGTTCCCACAGCGTTGCATGAGAAAGAAGGGAATTCCCAGATTTTTTATGGGAATGACTCCTTTTATGTGCTTTTCAGACTTCACCAGACATTATATGAGAGGATACAATCAGCAAAGATCAACTCTTCATCTGCTGAAAGAAGGTGGAAGGCTTCAAATGAAACAAATTCTACTGATCAGTATGGCAGGTTCATGAATGCCCTTTACAGTTTACTGGATGGTTCTTCTGACAACACAAAATTTGAGGATGACTGCAGGGCTATTATTGGAACTCAATCTTATGTCTTATTCACTTTAGACAAGCTGATATATAGACTAGTTAAACAGCTTCAAGCTGTTGCAACTGATGAGATGGATAACAAGCTTCTCCAACTTTATACATATGAGAAATCAAGAAAACCGGGAAGATTTGTTGACAGAGTTTATCATGAAAATGCCCGTGTTCTTCTTCATGATGAGAATTTATATCGAATTGAATGTTCATCTACACCAACCCGATTATCTATTCAATTGATGGACTATGGACATGATAAGCCTGAATTGACTGCTGTGTCCATGGACCCAAATTTTTCAGCCTATCTGCACAATGACTTCCTCTCTGTTATACCTGACAAAAAGGAAAAGTCAGGGATTTTCCTGAAGAGTTTTGTCTATTCTGCCTTTGTCAGGAATAAACGCAGATATGTATGTCCTGATGAACACTCAAGCCAGGCCTTGGAAGGACTACAAATTAGTAATGGCCTGGAGTGTAAAATAGCTTGCAGTTCGTCCAAGGTTTCATATGTTCTAGACACCGAGGACTATTTGTTTCGGATGAGAAGGAAAAGAAAAACTTTGCATCAGAACAGTTCATGCCATGAACAGGCAAAGTCATCAAACACTTGTTCAAGCAGAGCACAGCGGTTTCGCAGATTGTTTCCCATTACATGA 4296 0.4111 MKRSRDDGYVSSQLKRPMVSSRGDAPGQPQMIGGGAQKLTTNDALLYLKAVKEMFHDKREKYDDFLEVMKNFKAQRIDTAGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFEEAINFVNKIKARFQGDDHVYKSFLDILNMYRKENKSITEVYHEVAALFQDHQDLLVEFTHFLPDASAAASAHYAQSARNSLLRDRSSAMPAIRQMHVDKRERTIASHDREHSVDHPDLDDRGFMRSEKELKRRGEKEKDRREDRDRKERDRDDRDYEHDNSRDYNMKNFPHRPKNVGRGDDFGAEPLHQGGDADEHFGLRSMSSPCDDKSSVKSMYSQEFAFCDKVKEKLRNPDDYQEFLKCLHIYSREIITRQELQSLVADLLGKYPDLMEGFNEFLARYGFLAGVMNKKSLWNEGHTSKSVKAEDRDRDRDRDRGGDDEVKERDREYRERDRPAAIANKDVSGSRMSMLSSKDKYMYKAINELDLSNCERCTPSYRLLPKHYPIPMASQRTELGAVVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINNNIIKAESPIRIEEHLTALNLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDMKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPILPNLEYEFSDPDIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFLEPMLGVPSRPQGAEDTEDVVKTKNNSVKSGAASVAESNGSPGSGATIMNSKQLSTSRNEDESIPLELSNSCKAWQMNGDGGVKEDNCIDTDHTTRKTETLGSSTQLCKMQAIASMPDGGSGINKQEHPSDRLVNARILLASGMEHSNGRTSIDNASGLTATQSRLAVEGGLNLPSSEGGDSTRLGTSTNGTLTGGTKVLRYVEESVGHLKGEREEGELSPNGDFEEDNSAVYRDAGLEAMSKGKDSGMIQQYQNRHGEEICGEAGGENDADADDEGEESHQRSLEDSENASENGDVSGSESVDGECSREEHEDGEHKAESEGEAEGMADANDVEGDGSLLPFSERFLLTVKPLAKYVPTALHEKEGNSQIFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERRWKASNETNSTDQYGRFMNALYSLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYRLVKQLQAVATDEMDNKLLQLYTYEKSRKPGRFVDRVYHENARVLLHDENLYRIECSSTPTRLSIQLMDYGHDKPELTAVSMDPNFSAYLHNDFLSVIPDKKEKSGIFLKSFVYSAFVRNKRRYVCPDEHSSQALEGLQISNGLECKIACSSSKVSYVLDTEDYLFRMRRKRKTLHQNSSCHEQAKSSNTCSSRAQRFRRLFPIT 1431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1806 1431 SUPERFAMILY PAH2 domain 119 192 IPR036600 GO:0006355
Prci10g1806 1431 Pfam Sin3 family co-repressor 499 590 IPR013194 -
Prci10g1806 1431 Gene3D Paired amphipathic helix 338 408 IPR036600 GO:0006355
Prci10g1806 1431 Pfam C-terminal domain of Sin3a protein 1137 1391 IPR031693 -
Prci10g1806 1431 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Prci10g1806 1431 Pfam Paired amphipathic helix repeat 362 406 IPR003822 GO:0006355
Prci10g1806 1431 Pfam Paired amphipathic helix repeat 146 190 IPR003822 GO:0006355
Prci10g1806 1431 MobiDBLite consensus disorder prediction 428 466 - -
Prci10g1806 1431 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Prci10g1806 1431 SUPERFAMILY PAH2 domain 340 406 IPR036600 GO:0006355
Prci10g1806 1431 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Prci10g1806 1431 MobiDBLite consensus disorder prediction 936 958 - -
Prci10g1806 1431 MobiDBLite consensus disorder prediction 1068 1090 - -
Prci10g1806 1431 FunFam Paired amphipathic helix protein Sin3 43 105 - -
Prci10g1806 1431 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Prci10g1806 1431 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Prci10g1806 1431 FunFam Paired amphipathic helix SIN3-like protein 122 193 - -
Prci10g1806 1431 MobiDBLite consensus disorder prediction 426 473 - -
Prci10g1806 1431 MobiDBLite consensus disorder prediction 973 994 - -
Prci10g1806 1431 PANTHER SIN3B-RELATED 37 1281 IPR039774 GO:0003714
Prci10g1806 1431 MobiDBLite consensus disorder prediction 1041 1055 - -
Prci10g1806 1431 FunFam Paired amphipathic helix protein SIN3 338 409 - -
Prci10g1806 1431 MobiDBLite consensus disorder prediction 790 828 - -
Prci10g1806 1431 MobiDBLite consensus disorder prediction 231 338 - -
Prci10g1806 1431 Coils Coil 570 590 - -
Prci10g1806 1431 MobiDBLite consensus disorder prediction 231 323 - -
Prci10g1806 1431 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Prci10g1806 1431 ProSiteProfiles PAH domain profile. 340 409 IPR003822 GO:0006355
Prci10g1806 1431 SMART hdac_interact2seq4b 497 597 IPR013194 -
Prci10g1806 1431 MobiDBLite consensus disorder prediction 1 35 - -
Prci10g1806 1431 MobiDBLite consensus disorder prediction 1026 1101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1806 Prci-Chr10 14483480 14494524 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1806 33 142 WRKY Transcription Factor Family AT4G12020 50.909 1.82e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Prci10g1806 Sin3a_C 2.8e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1806 K11644 - mnt:21394293 2078.52