Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1796 ATGACGAAGTTGTACTGCAAGAAATACAATGAGTACATGCAAAGCCAGCAGGAGAAGAAGCTTCCTGAAGTTGATATCAATAAGCTCAAGACTATCTTGAAAACATGTCGCAGAGATTGTCCTTGCCGGAAAGGCATCACCGGAGGAGGAGAAGAAGAAGAAGAAGCCCTTGCAGTTCCAAAGTGCACCGATCGTTGCCCAGTGTGTGATGGAAGCTCCTTCTTTCCTTCTCTTCTCAATGGGATGAGTGAAGTAGTGGCTTACTTTAACGATCGAGCCCGGAAATTGATTGAGCTTCATCGTGCTTCTAGCTTCAAGAAGTACTTTCTATCCTTCAAAACCAAATTACGTGGACAACAACATATTGACCACATTCAAGAAGGCAAAGATCTTGTTACTTACGCTCTAATCACTTCCACTGTAATTCACAAGATACTCGAAAAATACGATAAGATTCATTATTCGAAGCAAGGGCAATTATTCAAGTCAAGAGCCCAGAGTATGCACGTGGAAATTCTTCGGAGTCCCTGGCTTTTAGAACTCATGGCCTTCCACATCAATTTAAGGGAAGCCAAGAGCGAATCAATGAACAAGGAATCTCATAATTCCTTTGATGGATACTACCTCACATTTAGGGATAATAAACCATCGCTTACTTTTGAGCACTTTGATTCCACCAAACTTGATATTGAATTGACTTGTTCTATATGCTTGGACACTGTTTTTGATCCGGTTTGTCTAACTTGTGGCCATATCTTCTGCTACACGTGCGCTTGTTCATCTGCATCAGTAGCTATTGTTGATGGGCTCAAGGCATCCAACTCTGCAGCAAAGTGTCCCCTATGCCGGGTGGGAGGAGTTTATCAAGGTGCTGTACGCTTGGAAGAACTGAATATCTTGTTAGGCAGAAGTTGTCAGGAATATTGGGAACAAAGGCTTCAAACAGAGAGGATAGAAAGAGTTAAGCAAATAAAAGAGTACTGGGAATCACAATGCAGAGCATTCATAGGTGTCTAA 1017 0.4208 MTKLYCKKYNEYMQSQQEKKLPEVDINKLKTILKTCRRDCPCRKGITGGGEEEEEALAVPKCTDRCPVCDGSSFFPSLLNGMSEVVAYFNDRARKLIELHRASSFKKYFLSFKTKLRGQQHIDHIQEGKDLVTYALITSTVIHKILEKYDKIHYSKQGQLFKSRAQSMHVEILRSPWLLELMAFHINLREAKSESMNKESHNSFDGYYLTFRDNKPSLTFEHFDSTKLDIELTCSICLDTVFDPVCLTCGHIFCYTCACSSASVAIVDGLKASNSAAKCPLCRVGGVYQGAVRLEELNILLGRSCQEYWEQRLQTERIERVKQIKEYWESQCRAFIGV 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1796 338 ProSitePatterns Zinc finger RING-type signature. 249 258 IPR017907 -
Prci10g1796 338 ProSiteProfiles Zinc finger RING-type profile. 234 283 IPR001841 -
Prci10g1796 338 SMART ring_2 234 282 IPR001841 -
Prci10g1796 338 CDD RING-HC_BAH1-like 224 297 - -
Prci10g1796 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 335 IPR013083 -
Prci10g1796 338 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 6 337 IPR033326 -
Prci10g1796 338 Pfam Zinc finger, C3HC4 type (RING finger) 232 283 - -
Prci10g1796 338 SUPERFAMILY RING/U-box 227 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1796 Prci-Chr10 14319377 14328732 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1796 224 283 C3H Transcription Factor Family AT4G28270 38.806 1.54e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1796 K16275 - gmx:100797432 447.973