Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1746 ATGGCGCCCGCTACTCAACTCCCTTGCGATTGTGACGGTGTCTGTATGATCTGCAAGAAGAAGCCTGCGGAGGAAGAAAAGTTGACATGCAAAACCTGTGCTTCCCAATGGCATGTCGCCTGTCTTTCTCATCCTCCCGCAACCATGGGGGAGACGCTTCAGTGGGAATGCCCCGATTGCTCAACTCCACCCTCCGATTGTCCTCTGGTGACTATTGGCAAAGCCGTAGTCGACGGGACCGGTGACTTGGTGGCCGCGATTCGAGCGATTGAGGCCGATGCTTCCCTTACGGAACTTGAGAAGGCTAAGAAACGTCAGCAACTCTTGAGCGGAAAGGCTGGGTCGGAGGAAGACGAAGGTGGCGTGAAGAAGAAGGTAGAAGGTGAAGGGAAGGACGTGTTGGATATTCTTAGTGGAACTCTGAACTGCTCCTTCTGTATGCAGTTACCCGAGAGGCCGGTTACGACTCCATGTGGCCACAATTTCTGCCTAAAATGCTTTCAGAAATGGATTGGACAAGGAAAACTAACATGTGCCAAGTGTCGTAGTGCCATACCTTCCAAAATGGCAAGTCAACCACGTATTAATTCTGCACTTGTCATTGCTATCCGTATGGCAAAGGTATCCAAAAACATTGGTTCAGGAGAAACCTCCAGAGTTTATCATTTTGTACATAACCAAGATAGACCAGACAAGGCTTATACTACAGAGCGGGCCCAAAGGAAAGGGAAATCAAATGCTTGCAGTGGAAAGATTTTTGTAACTGTGCCTCAGGATCATTTTGGTCCAATCCCAGCTGAGAATGATCCAGTGAGGAATCAAGGTGTGCTGGTTGGTGAATGTTGGGAAGATAGACTTGAATGCCGTCAATGGGGTGCTCACTTCCCTCATGTTAGTGGTATTGCTGGACAATCAAACCATGGGGCGCAATCAGTAGTTCTTTCTGGTGGCTATGTTGATGATGAGGATCACGGAGAGTATTTTCTTTATACTGGAAGTGGTGGTAGAGACTTAAGTGGAAACAAACGAACAAGCAACACACAATCATTTGATCAAAAGTTTGAGAAGTCCAATTTAGCTTTAAAAGTTAGCTGTTTAAAAGGTTATCCAGTTCGAGTTGTAAGATCTCACAAAGAGAAGCGTTCCTCATATGCCCCCGAACGAGGATTACGTTATGATGGTGTTTACAGAATCGAAAAGTGTTGGCGTAAACAGGGAATGCAGGGCTTCAAAGTTTGTCGGTACTTATTTGTTAGATGTGACAATGAACCAGCCCCATGGACAAGTGATGATCATGGAGATCGTCCCCGACCATTGCCAGTAATTCCTGAGTTGCAAAATGCTACAGACTTAGTTGAAAGGAAGGCGAGTCCATCATGGGATTTTGATGAGGAAGGATCTTGTTGGAAGTGGAAAACACCACAACCTCCCAGTCAAAGGCATGTAAAAAGTATGGATCCCCAAGAAGTGAAAAGGTCAAGAAGAGAAATAAGGAAAGCCCAAAATCTTTCAGTCAGGGAAAGATTGCTGAAAGGATTTGGTTGCCTCATCTGTAAAGAGGTTATGGGTACTCCTGTGACGACACCTTGTGCTCATAATTTCTGTAAGTCATGTTTGGAAGGTGCATTTGTGGGCCAGACTTTTGTGAGAGACAGAAGCAGGGGTGGAAGATCACTGCGGTTACAAAAGAATGTGATGAAATGCCCTGCTTGCCCAACTGACATTTCTGATTTTCTTCAGAACATTCAGGTTAATACAGAGTTGTTGGGCTTAATTGAATCATTGAAAGCTGAGGCTGAAGAAAATGCAGAAGAAAGTGAGGATGAAGATGGAGCAGAGGCAGACTGTGATGGTACTGATGCTAAAATGGATGAAGACAAGGAAACTTCAAATGAGAAGCTTAATGATTCAGCTGAGGAAACTGATGCTTGCAAACTGCTGTCAAAAGGACTTGGTGCGACCAATCGAGTGGCCAAAGGTAATTGCAAAAGAAAGAGAGCTGATGCTGAAAAAGTTTCTCCCAAAATTGATAGAAGTAAAAAGGTTGAGGATGATGGAAATGATTCACCAGCAAGTCCTCTTCACTTGCCATCAGACGATTAA 2103 0.4494 MAPATQLPCDCDGVCMICKKKPAEEEKLTCKTCASQWHVACLSHPPATMGETLQWECPDCSTPPSDCPLVTIGKAVVDGTGDLVAAIRAIEADASLTELEKAKKRQQLLSGKAGSEEDEGGVKKKVEGEGKDVLDILSGTLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKLTCAKCRSAIPSKMASQPRINSALVIAIRMAKVSKNIGSGETSRVYHFVHNQDRPDKAYTTERAQRKGKSNACSGKIFVTVPQDHFGPIPAENDPVRNQGVLVGECWEDRLECRQWGAHFPHVSGIAGQSNHGAQSVVLSGGYVDDEDHGEYFLYTGSGGRDLSGNKRTSNTQSFDQKFEKSNLALKVSCLKGYPVRVVRSHKEKRSSYAPERGLRYDGVYRIEKCWRKQGMQGFKVCRYLFVRCDNEPAPWTSDDHGDRPRPLPVIPELQNATDLVERKASPSWDFDEEGSCWKWKTPQPPSQRHVKSMDPQEVKRSRREIRKAQNLSVRERLLKGFGCLICKEVMGTPVTTPCAHNFCKSCLEGAFVGQTFVRDRSRGGRSLRLQKNVMKCPACPTDISDFLQNIQVNTELLGLIESLKAEAEENAEESEDEDGAEADCDGTDAKMDEDKETSNEKLNDSAEETDACKLLSKGLGATNRVAKGNCKRKRADAEKVSPKIDRSKKVEDDGNDSPASPLHLPSDD 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1746 700 MobiDBLite consensus disorder prediction 598 640 - -
Prci10g1746 700 ProSiteProfiles Zinc finger PHD-type profile. 12 63 IPR019787 -
Prci10g1746 700 SMART ring_2 143 181 IPR001841 -
Prci10g1746 700 SMART ring_2 515 571 IPR001841 -
Prci10g1746 700 SMART ring_2 15 60 IPR001841 -
Prci10g1746 700 Gene3D - 242 439 IPR036987 -
Prci10g1746 700 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 89 210 - -
Prci10g1746 700 MobiDBLite consensus disorder prediction 616 640 - -
Prci10g1746 700 ProSiteProfiles YDG domain profile. 271 419 IPR003105 -
Prci10g1746 700 Pfam SAD/SRA domain 273 422 IPR003105 -
Prci10g1746 700 MobiDBLite consensus disorder prediction 600 615 - -
Prci10g1746 700 SUPERFAMILY RING/U-box 509 597 - -
Prci10g1746 700 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 242 437 - -
Prci10g1746 700 Coils Coil 585 609 - -
Prci10g1746 700 SUPERFAMILY RING/U-box 135 189 - -
Prci10g1746 700 ProSitePatterns Zinc finger PHD-type signature. 9 60 IPR019786 -
Prci10g1746 700 MobiDBLite consensus disorder prediction 658 700 - -
Prci10g1746 700 SMART G9a_1 266 423 IPR003105 -
Prci10g1746 700 MobiDBLite consensus disorder prediction 661 688 - -
Prci10g1746 700 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 62 IPR013083 -
Prci10g1746 700 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 5 609 IPR045134 -
Prci10g1746 700 ProSitePatterns Zinc finger RING-type signature. 530 539 IPR017907 -
Prci10g1746 700 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 208 IPR013083 -
Prci10g1746 700 SUPERFAMILY FYVE/PHD zinc finger 7 65 IPR011011 -
Prci10g1746 700 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 482 623 IPR013083 -
Prci10g1746 700 ProSiteProfiles Zinc finger RING-type profile. 515 571 IPR001841 -
Prci10g1746 700 SUPERFAMILY PUA domain-like 245 442 IPR015947 -
Prci10g1746 700 CDD RING-HC_ORTHRUS_rpt1 141 186 IPR047498 -
Prci10g1746 700 Pfam Zinc finger, C3HC4 type (RING finger) 143 181 IPR018957 GO:0046872
Prci10g1746 700 SMART PHD_3 14 61 IPR001965 -
Prci10g1746 700 ProSiteProfiles Zinc finger RING-type profile. 143 182 IPR001841 -
Prci10g1746 700 Pfam RING-type zinc-finger 515 560 IPR027370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1746 Prci-Chr10 12923436 12928418 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1746 1 601 C2H2 Transcription Factor Family AT5G39550 62.541 0.0 749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1746 K10638 - qsa:O6P43_017375 970.689