Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1686 ATGTTTTTTTGCTTCTCCATCGCAGAACAAAAGGCAAAATTTGCAGTATTAGGAGACACAGAAATGACAGGCTTGGATGCAGCAGCAGTGGAGGGATTCAGAACCTTGACTGAGACTAAAGCTTGGGACTATATTGTAGTATGGAAGTATGGCGATGATCCTACAAGGTTTATCGAGTGGATGGACTGCTGTTGTGTTGGAGGATATCGTGGAAGCAACGAGGTGAAGACCGAAGAGGAATGTAGACTGAATCGAAGATGTAGAGATACTCACTATCAGCATCCAGTGAGAACGAAGGCTTGTGAGGCTCTTGCTCAGCTTCCTTATACAATGCCACTCTATTCTGGTGTTCATGGAGATGTGGCAATATCAAAACAACCTCAGTGGCTTACCCAGGATTCAACTGGAACTCAAGTTTTGGTTCCTATTACTGGTGGCATTATAGAGCTCTTCACATCAGAGATTGTAGCAAAAGATTCAAGGATAATAGAATTGATAACTGCACGTTGCTGTCTCTCTATGATGATCAAGGAAGCCATCTCTGAACATCCACCATTGGATGCATACCGTCCACAAAGCTTAATTTCTAGCTTACATGCATCTGCAGGAGAGCAGTGCAGGTCTCATCCAAGCATTGAAGGATCCTCCAGTGGATCAAATCCTTCCAATGAAACTTCAAAAGAGCACCAAAGAGGTTTGGATTTCCAGTGTGGTGGCACTCTAGAAGATAAACCAGACCTGGTCAACAGACCTTATGGGGAAGGCTATACATCTAAAAATCTTGTCACAGAGAGGAATAGGAGGAGCAGGATCAAAGATGGGCTATATGCTCTACGAGCTTTGGTCCCAAAGATAAGCAAGATGGATAGGGCATCCATTGTTGCAGATGCCATTGATTATATAAAGGAGCTGCAGGGACAAGAAAAAGGACTTAGAGATGAGATGACAGCTTCGGAAGGAGAGGATCATGAAAGGAACAAACCACAGTCCAGGAGGCCAATAGTGAAGGAACAAGGAGGGACTAGAAGTTCCTCTAATTGCACAAAAAGGACCCAGACGGAGGTGCAGGTTGAAGTGAACCAGATTGGGAAGAGAGAATTTCTTGTGAAGATACACTGTGAGAAGAAGAGAGGAGGGTTTGCTAAATTGATGGAGGCTATTCATTTGTTTGGACTTCAGGTAACTAATGCTAATGTGAACACAGTTGGTGAAAAAGTCATGAACATTCTGACTGTTAAGGCAAACAAGCTTGATGTTCACCCAGACAAACTTAGAGAGTATTTAACAAAGCAAGCTGGTTCTCAGGAAAGAGGAGCTGATGTTGAGCTCAAGAAAGCTTAG 1341 0.434 MFFCFSIAEQKAKFAVLGDTEMTGLDAAAVEGFRTLTETKAWDYIVVWKYGDDPTRFIEWMDCCCVGGYRGSNEVKTEEECRLNRRCRDTHYQHPVRTKACEALAQLPYTMPLYSGVHGDVAISKQPQWLTQDSTGTQVLVPITGGIIELFTSEIVAKDSRIIELITARCCLSMMIKEAISEHPPLDAYRPQSLISSLHASAGEQCRSHPSIEGSSSGSNPSNETSKEHQRGLDFQCGGTLEDKPDLVNRPYGEGYTSKNLVTERNRRSRIKDGLYALRALVPKISKMDRASIVADAIDYIKELQGQEKGLRDEMTASEGEDHERNKPQSRRPIVKEQGGTRSSSNCTKRTQTEVQVEVNQIGKREFLVKIHCEKKRGGFAKLMEAIHLFGLQVTNANVNTVGEKVMNILTVKANKLDVHPDKLREYLTKQAGSQERGADVELKKA 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1686 446 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 255 304 IPR011598 GO:0046983
Prci10g1686 446 MobiDBLite consensus disorder prediction 308 352 - -
Prci10g1686 446 Pfam Helix-loop-helix DNA-binding domain 263 305 IPR011598 GO:0046983
Prci10g1686 446 MobiDBLite consensus disorder prediction 308 332 - -
Prci10g1686 446 MobiDBLite consensus disorder prediction 205 226 - -
Prci10g1686 446 Gene3D - 256 320 IPR036638 GO:0046983
Prci10g1686 446 MobiDBLite consensus disorder prediction 205 256 - -
Prci10g1686 446 MobiDBLite consensus disorder prediction 336 352 - -
Prci10g1686 446 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 34 167 IPR025610 -
Prci10g1686 446 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 162 432 - -
Prci10g1686 446 Coils Coil 301 321 - -
Prci10g1686 446 SMART finulus 261 310 IPR011598 GO:0046983
Prci10g1686 446 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 255 316 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1686 Prci-Chr10 12469368 12471797 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1686 258 438 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 39.604 2.35e-34 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci10g1686 bHLH-MYC_N 1.5e-14 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1686 - - pcin:129321737 882.863