Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1685 ATGGCGATGATCCTACAAGGTAGGTTTATCGAGTGGATGGACTGCTGTTGTGTTGGAGGATATCGTGGAAGCAACGAGGTGAAGACCGAAGAGGAATGTAGACTGAATCGAAGATGTAGAGATACTCACTATCAGCATCCAGTGAGAACGAAGGCTTGTGAGGCTCTTGCTCAGCTTCCTTATACAATGCCACTCTATTCTGGTGTTCATGGAGATGTGGCAATATCAAAACAACCTCAGTGGCTTACCCAGGATTCAACTGGAACTCAAGTTTTGGTTCCTATTACTGGTGGCATTATAGAGCTCTTCACATCAGAGATTGTAGCAAAAGATTCAAGGATAATAGAATTGATAACTGCACGTTGCTGTCTCTCTATGATGATCAAGGAAGCCATCTCTGAACATCCACCATTGGATGCATACCGTCCACAAAGCTTAATTTCTAGCTTACATGCATCTGCAGGAGAGCAGTGCAGGTCTCATCCAAGCATTGAAGGATCCTCCAGTGGATCAAATCCTTCCAATGAAACTTCAAAAGAGCACCAAAGAGGTTTGGATTTCCAGTGTGGTGGCACTCTAGAAGATAAACCAGACCTGGTCAACAGACCTTATGGGGAAGGCTATACATCTAAAAATCTTGTCACAGAGAGGAATAGGAGGAGCAGGATCAAAGATGGGCTATATGCTCTACGAGCTTTGGTCCCAAAGATAAGCAAGATGGATAGGGCATCCATTGTTGCAGATGCCATTGATTATATAAAGGAGCTGCAGGGACAAGAAAAAGGACTTAGAGATGAGATGACAGCTTCGGAAGGAGAGGATCATGAAAGGAACAAACCACAGTCCAGGAGGCCAATAGTGAAGGAACAAGGAGGGACTAGAAGTTCCTCTAATTGCACAAAAAGGACCCAGACGGAGGTGCAGGTTGAAGTGAACCAGATTGGGAAGAGAGAATTTCTTGTGAAGATACACTGTGAGAAGAAGAGAGGAGGGTTTGCTAAATTGATGGAGGCTATTCATTTGTTTGGACTTCAGGTAACTAATGCTAATGTGAACACAGTTGGTGAAAAAGTCATGAACATTCTGACTGTTAAGGCAAACAAGCTTGATGTTCACCCAGACAAACTTAGAGAGTATTTAACAAAGCAAGCTGGTTCTCAGGAAAGAGGAGCTGATGTTGAGCTCAAGAAAGCTTAG 1197 0.4361 MAMILQGRFIEWMDCCCVGGYRGSNEVKTEEECRLNRRCRDTHYQHPVRTKACEALAQLPYTMPLYSGVHGDVAISKQPQWLTQDSTGTQVLVPITGGIIELFTSEIVAKDSRIIELITARCCLSMMIKEAISEHPPLDAYRPQSLISSLHASAGEQCRSHPSIEGSSSGSNPSNETSKEHQRGLDFQCGGTLEDKPDLVNRPYGEGYTSKNLVTERNRRSRIKDGLYALRALVPKISKMDRASIVADAIDYIKELQGQEKGLRDEMTASEGEDHERNKPQSRRPIVKEQGGTRSSSNCTKRTQTEVQVEVNQIGKREFLVKIHCEKKRGGFAKLMEAIHLFGLQVTNANVNTVGEKVMNILTVKANKLDVHPDKLREYLTKQAGSQERGADVELKKA 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1685 398 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 207 268 IPR036638 GO:0046983
Prci10g1685 398 MobiDBLite consensus disorder prediction 260 302 - -
Prci10g1685 398 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 8 119 IPR025610 -
Prci10g1685 398 SMART finulus 213 262 IPR011598 GO:0046983
Prci10g1685 398 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 207 256 IPR011598 GO:0046983
Prci10g1685 398 MobiDBLite consensus disorder prediction 157 208 - -
Prci10g1685 398 Pfam Helix-loop-helix DNA-binding domain 215 257 IPR011598 GO:0046983
Prci10g1685 398 Gene3D - 208 272 IPR036638 GO:0046983
Prci10g1685 398 MobiDBLite consensus disorder prediction 157 178 - -
Prci10g1685 398 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 114 384 - -
Prci10g1685 398 MobiDBLite consensus disorder prediction 288 302 - -
Prci10g1685 398 Coils Coil 253 273 - -
Prci10g1685 398 MobiDBLite consensus disorder prediction 260 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1685 Prci-Chr10 12469368 12471797 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1685 210 390 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 39.604 1.04e-34 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci10g1685 bHLH-MYC_N 4.1e-09 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1685 - - pcin:129321737 769.615