Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1640 ATGGAGGAAATGTACGGCCTCCCGTCGTCCCCTGAGGATTACTCGGACAAAGCCATCATGACGCCCGACAATCTGATCTTCCCGGCCGACTACCAGAGCTTCCTCATGTCTTCCTCCGCCGCCGCCGCCGGCTTCCGTGATCGGATTCCCGTTTTAGGATCCGAAGAGTTGCTGTCCGCTGCCTCCGCGATTACCGAAGTCGAAGCCTCCGTCGCTGCTCCTGAATTTCGGCCACAAGAGGACTCTTCCTCCGTCATCAAAGCCAGAATCGCGTCTCATCCTAACTATCCTCGTCTCATTCAAGCTTATATCGATTGCCAGAAGGTAGGAGCACCTCCAGAAATAGCGTGTTTCTTAGATGAAATCCGGCGAGAAAACGACCTCAACAAGAGGGACGTTGTTTCCACGTGCTTTGGAGACGACCGCGAGCTCGACGAGTTCATGGAAACCTACTGCGACGTGCTGTTGAAGTATAAATCTGATCTTGCCCGGCCTTTTGATGAAGCAACCTCTTTCCTTAACAAGATCGAAACCCAGCTCACCAATCTCTGCAGTGGTGCTTCCCTTCTAAGCCTTCCCGATGATGGAGGTGTGTCTTCAGAAGAAGATTTCAGTACTGCAGGTAGAGACACTCAAGATGGTCAGGCGAAGGTTGAAGATCAAGAGATTAAGGACAGGCTTTTACGCAAGTTTGGGAGCCGTATTGCCTCTTTGAAATTGGAGTTCTCGAAAAAGAAGAAGAAGGGTAAGCTACCAAAAGAAGCCAGGCAAGCACTGCTTGAGTGGTGGAGTGTTCACTACAAGTGGCCATACCCAACGGAATCTGATAAGATTGCTCTGGCCAAGTCCACGGGTCTGGACCAGAAGCAAATTAACAATTGGTTTATTAATCAGAGAAAGCGCCACTGGAAGCCATCTGAGAACATCAGCGCGCAATTTTCTGCCATGGATAATCTCACTGGACTTTTTTTTACTGATGAATGA 984 0.497 MEEMYGLPSSPEDYSDKAIMTPDNLIFPADYQSFLMSSSAAAAGFRDRIPVLGSEELLSAASAITEVEASVAAPEFRPQEDSSSVIKARIASHPNYPRLIQAYIDCQKVGAPPEIACFLDEIRRENDLNKRDVVSTCFGDDRELDEFMETYCDVLLKYKSDLARPFDEATSFLNKIETQLTNLCSGASLLSLPDDGGVSSEEDFSTAGRDTQDGQAKVEDQEIKDRLLRKFGSRIASLKLEFSKKKKKGKLPKEARQALLEWWSVHYKWPYPTESDKIALAKSTGLDQKQINNWFINQRKRHWKPSENISAQFSAMDNLTGLFFTDE 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1640 327 FunFam Homeobox protein knotted-1-like 2 247 309 - -
Prci10g1640 327 ProSiteProfiles 'Homeobox' domain profile. 242 305 IPR001356 GO:0003677
Prci10g1640 327 SMART HOX_1 244 309 IPR001356 GO:0003677
Prci10g1640 327 Pfam ELK domain 222 243 IPR005539 GO:0003677
Prci10g1640 327 SMART ELK_2 222 243 IPR005539 GO:0003677
Prci10g1640 327 SUPERFAMILY Homeodomain-like 243 313 IPR009057 -
Prci10g1640 327 SMART KNOX1_2 84 128 IPR005540 GO:0003677|GO:0005634
Prci10g1640 327 MobiDBLite consensus disorder prediction 194 218 - -
Prci10g1640 327 ProSiteProfiles ELK domain profile. 222 242 IPR005539 GO:0003677
Prci10g1640 327 Pfam KNOX2 domain 138 184 IPR005541 GO:0003677|GO:0005634
Prci10g1640 327 SMART KNOX2_2 134 185 IPR005541 GO:0003677|GO:0005634
Prci10g1640 327 Pfam Homeobox KN domain 262 301 IPR008422 GO:0003677|GO:0006355
Prci10g1640 327 Gene3D - 240 315 - -
Prci10g1640 327 Pfam KNOX1 domain 86 127 IPR005540 GO:0003677|GO:0005634
Prci10g1640 327 ProSitePatterns 'Homeobox' domain signature. 280 303 IPR017970 GO:0000981|GO:0006355
Prci10g1640 327 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 70 312 - -
Prci10g1640 327 CDD homeodomain 254 306 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1640 Prci-Chr10 12013271 12022890 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1640 1 327 Homeobox Transcription Factor Family AT1G23380 63.690 6.01e-142 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Prci10g1640 KNOX2 1.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1640 - - vri:117903949 453.366