Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1609 ATGGAAGAAGCTTTCAGGCGTCTCAACGGCCTCGACTCCAACGAATCCTTCTCCGACCACCCAAAGAAGTGCGCCTCCGCTGCCAACAAGAGGGCTTTGAGAGATAACGGCGCCGGCGGTATAAGGTACCGTGGAGTCAGGCGTAGGCCCTGGGGTCGTTACGCCGCCGAGATAAGAGACCCTCTGTCAAAGGAAAGACGCTGGCTCGGTACCTTCGACACGGCTGAGGAAGCCGCTTGCGCTTACGACTGCGCCGCTCGATCCATGCGTGGCCTGAAAGCTCGCACCAACTTCGTCTACCCAACTTCGCCTTCTCCTCCTCCTTCTTTCAACTTTCCCAGACAATCTCCGATGTCGTCTGTTAATATTAACAAGAACCTCCTTAACCACCGCCATGTGGGAGCTTCTAGTTGGTCCAACCCTCGTGCCTGTTCAACCCACCACCACCGGAACCCTACCTCGAATATGATTATGCACCCTGATGTTCTCAACCCTTCTTTGGTTCCCTCTTCTTCTTCTTCTACATCGTCCACCTGTCCCACGTGTACTTGTCTCCGAAGTTGCTGTTTGATGAATTCTTCTGGTGGCACTAACACTATTAGTAGTAGCACATGTGGGTTTGCTTCCGTTTCGATGAACACAACCCACCATAATGGGATAACTAAAAGCAATTTTGAAGCTGATGATGATCAATTTGAGTTCTTTCCAGGACAAGCTTCAGGCTCGGGGTTGTTGGAGGAGATAGTTCATAAATTCATGTTAACTTCGAAGCCCGAGAAATTTGAGGCTCCTACTCCAGAGTTACCCTCTCAGCCAGTGCCTGATCCCACATTTGATCCAGCTTCTCAATGCCATAACGAAACAAAGAAAGAGTGTTTTGGTGTCTATTTTGACGAGCCTGTAGGTTTTCTTCCCATGCAACATCAGATTGAAGGTTTTGATGAGCAGGCTATGCATTTTGGCAACGGTCAGTTGATGAACCATGCAGATTTCTCATTCACTCAAGATCTTGTTCGTTACCAAGAGATTCTTAATGCCTTTGCAGCCAGCGTCCAAAACGCTTAA 1065 0.4901 MEEAFRRLNGLDSNESFSDHPKKCASAANKRALRDNGAGGIRYRGVRRRPWGRYAAEIRDPLSKERRWLGTFDTAEEAACAYDCAARSMRGLKARTNFVYPTSPSPPPSFNFPRQSPMSSVNINKNLLNHRHVGASSWSNPRACSTHHHRNPTSNMIMHPDVLNPSLVPSSSSSTSSTCPTCTCLRSCCLMNSSGGTNTISSSTCGFASVSMNTTHHNGITKSNFEADDDQFEFFPGQASGSGLLEEIVHKFMLTSKPEKFEAPTPELPSQPVPDPTFDPASQCHNETKKECFGVYFDEPVGFLPMQHQIEGFDEQAMHFGNGQLMNHADFSFTQDLVRYQEILNAFAASVQNA 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1609 354 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Prci10g1609 354 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Prci10g1609 354 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 27 211 - -
Prci10g1609 354 FunFam Ethylene-responsive transcription factor 2 42 100 - -
Prci10g1609 354 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Prci10g1609 354 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Prci10g1609 354 MobiDBLite consensus disorder prediction 1 30 - -
Prci10g1609 354 Gene3D AP2/ERF domain 41 100 IPR036955 GO:0003700|GO:0006355
Prci10g1609 354 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Prci10g1609 354 CDD AP2 42 98 IPR001471 GO:0003700|GO:0006355
Prci10g1609 354 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1609 Prci-Chr10 11605185 11606249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1609 1 253 AP2-EREBP Transcription Factor Family AT1G24590 38.745 1.04e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci10g1609 AP2 9.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1609 - - pcin:129322403 684.485