Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1577 ATGGCGCGGGAGAAGATTCAGATTAAGAAGATCGACAACGCTGCGGCAAGGCAAGTGACGTTCTCCAAGCGACGCAGGGGGCTCTTCAAAAAAGCTGAGGAGCTTTCTGTCCTCTGTGACGCAGATGTTGGCCTCATAGTCTTCTCCTCAACTGGAAAGCTTTCTGAGTACTCCAGCACAAGCATGAAGGAAATGCTCGAAAGGTATCATTTGCACTCGAAGAACATATCACACCAAGAACAACCGTCTCTTGAATTGCAGCTAGTTGAGGACAGCAACCGCGCCAACTTGAGCAAGGAAGTTGCTGAGAAGAGCCGTCAACTAAGACAGATGAGAGGAGAAGATCTGCAGGGTTTAGATATCCAGGAATTACAGCAACTAGAGAGGTCTCTCGAATCTGGATTGGGCCGTGTAATAGAAAAGAAGGAAGAGAAGATAATTACTGAGATCAGTGATCTCCAGAGAAAGGGAATCGAGTTGATGGAAGAGAACGAGCTGTTGAAGCTTCAAGTGGCAAAATTATCTGATGGCAATAGGCAAGGTGGTACTGAGTCCGACATCCTCACTAACGAGGAAGGCCAGTCATCGGAATCTGTCACTATCATCTGCAACTCCGCTGGACCTCCTCAAGACTCTGACAGCTCAGACACATCGCTCAAGCTGGGGTTACCATATGCTGGCTGA 684 0.481 MAREKIQIKKIDNAAARQVTFSKRRRGLFKKAEELSVLCDADVGLIVFSSTGKLSEYSSTSMKEMLERYHLHSKNISHQEQPSLELQLVEDSNRANLSKEVAEKSRQLRQMRGEDLQGLDIQELQQLERSLESGLGRVIEKKEEKIITEISDLQRKGIELMEENELLKLQVAKLSDGNRQGGTESDILTNEEGQSSESVTIICNSAGPPQDSDSSDTSLKLGLPYAG 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1577 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci10g1577 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci10g1577 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci10g1577 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci10g1577 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci10g1577 227 MobiDBLite consensus disorder prediction 177 227 - -
Prci10g1577 227 Pfam K-box region 94 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci10g1577 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 184 - -
Prci10g1577 227 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Prci10g1577 227 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Prci10g1577 227 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci10g1577 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci10g1577 227 FunFam Transcription factor, MADS-box 13 83 - -
Prci10g1577 227 Coils Coil 94 114 - -
Prci10g1577 227 Coils Coil 150 170 - -
Prci10g1577 227 MobiDBLite consensus disorder prediction 177 219 - -
Prci10g1577 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci10g1577 227 SUPERFAMILY SRF-like 3 76 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1577 Prci-Chr10 11174407 11179582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1577 1 227 MADS-box Gene Family AT2G22540 65.417 3.02e-105 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci10g1577 K-box 1.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1577 - - gmx:100789126 332.028