Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1565 ATGGCTCGCGCTACAAACTGGCTGTCGTTTTCGCTGTCGCCGATGGAAATGTTGAGATCCTCCTCCGATTCTCAGTTCGTCCAATACGACAATCTCTCTGCTAACAACAACTCTCATTACTTCGTCGATAATTTCTATGCCAATGGATGGCCGAATCTGAAGTCACAAGCAGATTACTATGGCCAAGTAGAACAAAACCAAACCGGAGACAGCTTGACGGGCCCACAAAATCAGAACGATGGAGTTCCGAAGCTGGAAGATTTTCTGGGCTACGCCGACAGCCAAACGGAGACGCAAGATTCGTCGCTGACTCAGATATACGAGCAGGGAGGCGGCGGCGGCGGCTACTTCGGCGATCCTCAGGATCTGAAAGCAATCGCTGGGTTTCAAGCTTTCTCTGCGAACTCCGGCTCCGAGGTAGAAGACTCGGCTTCCATGGCCAAGACTGCTCATCAGGCTGCTTGTGGGGAGTTTGCGATCGAGTCCTCTGGGAACGAAGTGGCGTTCTCCGGTTGCACGACGGGTGCTTTGTCCCTGGGCGTCACTCAAAGCCGTGAGAAAGCCATTGTTGCGGTGGACTCGGATAGCAAGAAGAAAGTCGCCGATACATTTGGTCAGCGAACTTCAATCTACAGAGGCGTTACAAGACACCGATGGACTGGAAGATATGAAGCGCATCTATGGGATAACAGTTGCAGAAGAGAGGGTCAGGCGAGGAAAGGACGTCAAGTGTATCTGGGAGGATATGACAAGGAAGATAAGGCCGCAAGAGCTTATGATTTGGCTGCTCTGAAGTACTGGGGTCCAACTGCTACCACCAACTTTCCTGTTTCGACTTACACAAAGGAATTGGAGGAGATGAAACATGTAACGAAGCAAGAATTCATTGCTTCACTGCGCAGGAAAAGTAGCGGTTTTTCTAGAGGAGCTTCTATATACAGAGGCGTAACAAGGCATCATCAGCAGGGTCGATGGCAAGCAAGAATCGGTCGTGTCGCGGGGAACAAAGATCTATACCTTGGAACATTTGCTACTGAGGAAGAAGCAGCTGAGGCATACGATATTGCAGCCATTAAATTCAGAGGTGCAGGTGCTGTGACGAACTTTGAGATGAACAGATACGATGTGGAAGCTATTATGAAGAGTACTCTTCCTGTTGGTGGATCAGCCAAACGTGCAAAACACTCCCCAGAATCAGAAGACAATGTTCTTCCTAGCAATAACCTCCATAACCTGCAACCTCAATATCCAAACGCGATCAATACCAACGGTGGAACTATCAGTTTCACTCCCATTCAACCTGCACTTGCTTCTATCCCCTGTGGCATTCCCTATGATTCCGCTGCAGCACATTACCACCACAATCTCTTGCACCATTTTTATCCTCCTAGCAGTTCTGGAACCGTCGATTCTGCTGTATCCGCAGCTGCGGCTGTTGTGGCTCCGATGACTTCGATGCCGGCTGCTGCTGAGTTTTTCCTGTGGCCTCATCAGCCTTGTTGA 1503 0.497 MARATNWLSFSLSPMEMLRSSSDSQFVQYDNLSANNNSHYFVDNFYANGWPNLKSQADYYGQVEQNQTGDSLTGPQNQNDGVPKLEDFLGYADSQTETQDSSLTQIYEQGGGGGGYFGDPQDLKAIAGFQAFSANSGSEVEDSASMAKTAHQAACGEFAIESSGNEVAFSGCTTGALSLGVTQSREKAIVAVDSDSKKKVADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDKAARAYDLAALKYWGPTATTNFPVSTYTKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGAGAVTNFEMNRYDVEAIMKSTLPVGGSAKRAKHSPESEDNVLPSNNLHNLQPQYPNAINTNGGTISFTPIQPALASIPCGIPYDSAAAHYHHNLLHHFYPPSSSGTVDSAVSAAAAVVAPMTSMPAAAEFFLWPHQPC 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1565 500 CDD AP2 209 278 IPR001471 GO:0003700|GO:0006355
Prci10g1565 500 FunFam AP2-like ethylene-responsive transcription factor 311 372 - -
Prci10g1565 500 Pfam AP2 domain 210 268 IPR001471 GO:0003700|GO:0006355
Prci10g1565 500 Pfam AP2 domain 312 362 IPR001471 GO:0003700|GO:0006355
Prci10g1565 500 MobiDBLite consensus disorder prediction 387 408 - -
Prci10g1565 500 SUPERFAMILY DNA-binding domain 209 278 IPR016177 GO:0003677
Prci10g1565 500 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 77 404 - -
Prci10g1565 500 SUPERFAMILY DNA-binding domain 311 371 IPR016177 GO:0003677
Prci10g1565 500 MobiDBLite consensus disorder prediction 66 80 - -
Prci10g1565 500 SMART rav1_2 210 282 IPR001471 GO:0003700|GO:0006355
Prci10g1565 500 SMART rav1_2 312 376 IPR001471 GO:0003700|GO:0006355
Prci10g1565 500 MobiDBLite consensus disorder prediction 66 85 - -
Prci10g1565 500 Gene3D AP2/ERF domain 312 372 IPR036955 GO:0003700|GO:0006355
Prci10g1565 500 Gene3D AP2/ERF domain 210 278 IPR036955 GO:0003700|GO:0006355
Prci10g1565 500 ProSiteProfiles AP2/ERF domain profile. 210 276 IPR001471 GO:0003700|GO:0006355
Prci10g1565 500 ProSiteProfiles AP2/ERF domain profile. 312 370 IPR001471 GO:0003700|GO:0006355
Prci10g1565 500 CDD AP2 311 370 IPR001471 GO:0003700|GO:0006355
Prci10g1565 500 FunFam AP2-like ethylene-responsive transcription factor ANT 209 278 - -
Prci10g1565 500 PRINTS Ethylene responsive element binding protein signature 211 222 IPR001471 GO:0003700|GO:0006355
Prci10g1565 500 PRINTS Ethylene responsive element binding protein signature 352 372 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1565 Prci-Chr10 11017462 11021746 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1565 71 498 AP2-EREBP Transcription Factor Family AT5G10510 55.842 2.72e-158 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Prci10g1565 AP2 6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1565 K09285 - cave:132171254 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g1565 10 11017462 11021746 Prci5g1834 5 36475272 36480665 CCT