Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1546 ATGAAGAAAAGTAATCCCTTGCTGCGGTGGTTTGCAATAACTGTGCTTTGTTTCTTGCTGCTTAGTGGTTCTTCTGAGGGTTCCGCCTCAATTAGAAGAGCTTTGCTGAAGAATAATAACCTCACACAACCGTCAACTTCGCCTGCTGTTAAGCTGGATGAAAAAAATCATAACCAGGTTGTGATGGATAATGGAATCATCCGCGTTACGTTGTCCAGACCAGAAGGCTACGTCCTTGCAATATCTTATAATGGAATTGACAATGTACTCGAAGCTCAAAACGGAAATGATAATAGAGGGTATCTTGACGTTGTTTGGAATCAAGGTTTTCAGAAAATCAAAGGGACCAAGTTCTCAGTTATAGAAAAGACTGAAGATCAATTAGAAGTTTCATTTTTAAGAGAATGGACATCTTCCATGATCGGATCAGTCCCTATAAAAATAGACATGAGGTATATAATGCGAAGAGGCGACTCGGGATATTACTCGTACGCAATATTTGAGCGGCCAAAAGGATTTCCAGCAGCTCGGGTTTTTCAGATTAGGCTAGTTTATAAGCTCCGACAAGACAAGTTCCACTATATGGCTATATCAGGGAAGAGGCAAAGAGTGATGCCAACAGCTGAGGATAGAAGCACCGGACAGAAACTTGCTTATCCTGAAGCTGTTCTTTTGACCAATGCGAAGGACCCAAGAATTAGAGGAGAGGTGGATGACAAATACCAGTACTCGGCGGAGAACAAAGACAACTGTGTGCATGGATGGATTAGCTTTGACACAGAACCACACACCGGCTTCTGGGTTATCGCGCCCAGTAATGAGTTTCGTAATGCTGGGCCCCACAAACAAGATCTTACGTCTCATGTTGGCCCCACCTCCCTTGCTATGTTTGTGAGCACTCACTACGCTGGGACGAATGTGTCGATTAACTTCCAAGAAGGGGAGACTTACAAGAAGGTGTTTGGCCCTATCTTTGTCTATCTTAACTCTGCTTCAACCAACGAGGATTTAGATACGCTCTGGTCTGATGCTGTTCGACAGTTCAACGAGGAAGTCAAAAGCTGGCCCTATGATTTCCCTCGATCTCCAGATTTCATTCTTCCGGGTCAACGTGGAACAGTAAATGGGCAATTACAAGTCCGAGATTGGTTTAAGAAGGGATGGGGAATTTTAAACGCTAAGTTTGCTTATGTTGGTCTAGCTCTGCCTGGAGAAAATGGATCATGGCAGATAGAGAGCAAGGGTTATCAATTCTGGGCTCAAGCTGATGAGAATGGCTACTTTGAAATCAAATACGTTATACCAGGGGACTATAATCTGTATGCCTGGGTTCCTGGGTTTATTGGTGATTACAGATATAATGCTACAGTCAGCATCAAACCAGGCGGTGTCATTAAATTGGGTCCACTTGTATTTAGTCCTTCAAGAAATGGCCCTACGATATGGGAAATTGGTATCCCAGATCGGTCAGCCCAAGAGTTATACGTACCAGACCCTGACCCTAAGCTTGTGAACAGATTATATCAGAATGATACGAGAAACAGGTTTAGACAATATGGGTTGTGGGAGCGTTACACTGACTTGTACCCGGAGAAAGACCTCGTTTATAATGTTGGCGTCGATAGGCATGACAAGAATTGGTTTTTTGCTCACATTTCCAGAAGGACAGGAAATGACACATACCAACCAGCAACATGGCAGATTAAATTTGAACTTGACGATTATGTCACATCATCAGGAAACTACACGCTTCAAGTGGCCTTAGCGTCAGCCAATGAAGCTAAGTTGCAGGTTTGGTTCAATGATGCGAGCGAGGTTGATCCCCACTATGAGACAGCGAGGATGGGAAAAGACAATGCAATAGCGAGGCATGGAATTCACGGGTTGTATAGTTTGATCAGTATTGAAGTAGCAAGTGATCGGTTTAAGAAGGGAAGCAATACTATCTATCTCAAGCAGTCAGAAGCCTCAGACTCATTTCAAGGTGTTTTGTATGATTATCTCCGTTTAGAAAGACCTCCAACTGATTCAAGGATATGA 2040 0.4333 MKKSNPLLRWFAITVLCFLLLSGSSEGSASIRRALLKNNNLTQPSTSPAVKLDEKNHNQVVMDNGIIRVTLSRPEGYVLAISYNGIDNVLEAQNGNDNRGYLDVVWNQGFQKIKGTKFSVIEKTEDQLEVSFLREWTSSMIGSVPIKIDMRYIMRRGDSGYYSYAIFERPKGFPAARVFQIRLVYKLRQDKFHYMAISGKRQRVMPTAEDRSTGQKLAYPEAVLLTNAKDPRIRGEVDDKYQYSAENKDNCVHGWISFDTEPHTGFWVIAPSNEFRNAGPHKQDLTSHVGPTSLAMFVSTHYAGTNVSINFQEGETYKKVFGPIFVYLNSASTNEDLDTLWSDAVRQFNEEVKSWPYDFPRSPDFILPGQRGTVNGQLQVRDWFKKGWGILNAKFAYVGLALPGENGSWQIESKGYQFWAQADENGYFEIKYVIPGDYNLYAWVPGFIGDYRYNATVSIKPGGVIKLGPLVFSPSRNGPTIWEIGIPDRSAQELYVPDPDPKLVNRLYQNDTRNRFRQYGLWERYTDLYPEKDLVYNVGVDRHDKNWFFAHISRRTGNDTYQPATWQIKFELDDYVTSSGNYTLQVALASANEAKLQVWFNDASEVDPHYETARMGKDNAIARHGIHGLYSLISIEVASDRFKKGSNTIYLKQSEASDSFQGVLYDYLRLERPPTDSRI 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1546 679 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 51 674 - -
Prci10g1546 679 CDD RGL4_M 370 470 IPR029413 -
Prci10g1546 679 Gene3D - 368 467 - -
Prci10g1546 679 Gene3D - 51 346 IPR014718 GO:0030246
Prci10g1546 679 Pfam Rhamnogalacturonate lyase family 42 237 IPR010325 -
Prci10g1546 679 CDD RGL4_N 58 333 - -
Prci10g1546 679 CDD RGL4_C 482 671 - -
Prci10g1546 679 Gene3D - 477 671 - -
Prci10g1546 679 Pfam Polysaccharide lyase family 4, domain III 480 670 IPR029411 -
Prci10g1546 679 SUPERFAMILY Starch-binding domain-like 368 468 IPR013784 GO:0030246
Prci10g1546 679 SUPERFAMILY Galactose-binding domain-like 477 671 IPR008979 -
Prci10g1546 679 Pfam Polysaccharide lyase family 4, domain II 395 466 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1546 Prci-Chr10 10757845 10766978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1546 60 675 Polysaccharide Lyase AT1G09910 54.006 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1546 K18195 - gmx:100776664 859.751