Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1536 ATGGGAAGAGGGAAGATTGAGATCCGAAGGATCGACAATTCAACGAGCAGACAAGTGACTTTCTCGAAGAGGAGAAAGGGATTGATCAAGAAGGCGAAGGAGCTAACAATCCTGTGTGATGCAGAAGTTGGACTCGTCATATTCTCCAGCACTGGAAAGCTCTATGAATATGCAAACACCAGGCAAATGATGGGAGAACAGCTTTATGGTTTAAGTGTGAAAAACCTACAAGATCTCGAGAACCAGCTGGAAATGAGTCTCCGATGTATTCGCATGGCAAAGGAACAAATCCTAACAGAAGAAATCCGAGAGCTGAATCGAAAGGGAAACTTTATACATCAGGAAAACCTGGAACTCTATAAGAAGGTAAACCTCCTTCGACAAGAAAACACACAACTATACAAGAAGGTTTATGGCACATCGGAAGTGGCAGCAGCAAGCAGAGATGCTTTCAATCCATATGGATTTCATACAGGCGAGGATCCACAAGAACAGATCCAACTGCAGCTAAGCCAGCCAGAGCAAGATACATATGAGACATCAGGCAGCGCCTCGAAATAG 561 0.4421 MGRGKIEIRRIDNSTSRQVTFSKRRKGLIKKAKELTILCDAEVGLVIFSSTGKLYEYANTRQMMGEQLYGLSVKNLQDLENQLEMSLRCIRMAKEQILTEEIRELNRKGNFIHQENLELYKKVNLLRQENTQLYKKVYGTSEVAAASRDAFNPYGFHTGEDPQEQIQLQLSQPEQDTYETSGSASK 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1536 186 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 160 - -
Prci10g1536 186 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci10g1536 186 Coils Coil 76 96 - -
Prci10g1536 186 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci10g1536 186 MobiDBLite consensus disorder prediction 162 186 - -
Prci10g1536 186 CDD MADS_MEF2_like 2 60 IPR033896 GO:0000977|GO:0045944
Prci10g1536 186 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci10g1536 186 Pfam K-box region 59 123 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci10g1536 186 ProSiteProfiles K-box domain profile. 39 129 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci10g1536 186 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci10g1536 186 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci10g1536 186 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci10g1536 186 SUPERFAMILY SRF-like 2 63 IPR036879 GO:0003677|GO:0046983
Prci10g1536 186 MobiDBLite consensus disorder prediction 152 186 - -
Prci10g1536 186 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Prci10g1536 186 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1536 Prci-Chr10 10613134 10629972 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1536 1 184 MADS-box Gene Family AT2G22630 49.787 2.10e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci10g1536 K-box 1.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1536 K09264 - qsa:O6P43_025186 253.062