Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1501 ATGACGGACTATAGGTCGCCGCCGACGATGAATCTTTGGACCGATGACAACTCCTCCGTTATGGAGGCTTTCATGAGCTCCGACCTATCCGTACTCTGGCCTCCTCCACCTCAGCCCCAGTCCTCTGCTTCCAACACTACTCCTGGACCTGACCCCACCAAGCCCCTCTCTCAGTTTCAGTCTTCCACTTCTCTTTTCAATCAAGAAACCCTTCAACGGCGCCTCCAGGCCTTAATTGAAGGTGCCAGAGAGAGCTGGACCTACGCTATCTTCTGGCAATCGTCGTACGACTACTCCGGCTCGTCCTTCCTCGGCTGGGGCGATGGGTACTACAAGGGGGAGGAAGATAAAGGAAAAGGGAAGGCCAAAACGCTGTCGTCCCGGGCGGAGCAGGAACACCGGAAAAAGGTTCTGCGCGAGCTGAATTCCCTCATTTCTGGATCATCTGCTCCCAGCGACGACGCCGTGGACGAAGAAGTCACCGATACGGAGTGGTTCTTTCTCGTTTCCATGACTCAATCGTTTGTCAACGGCGACGGGTTGCCGGGTCAGGCCTTCTACAACTCCGCCCCGGTCTGGATCACCGGTGGGGAGAGGTTAGCGGCTTCAACCTGCGAAAGAGCGAGACAGGGCCAGGTGTTCGGGCTTCGGACTTTGGTTTGCATACCATCGGCGAACGGGGTGGTGGAGTTAGGATCCACTGAATTGATTTTCCAGAACTCGGATCTGATGAACAAGGTGAAAGTATGGTTCAATTTCAACAATCCAGAAATTGGTTCGTGGCCTCTCATGGCTCCTAATGCCGATCAAGGTGAGAACGACCCTTCTTCGCTTTGGCTTAACGATCCGTCTTCTGGAATTGAAATCAGAGATTCGACCAACACTACTGTTCCGGCTTCGGTTCCAAGCTCGAATAACAGTCACAATATTCAGACAATCGCAAAGCCAATGCAGTTTGAAACCCCAGTTTCGAGTACTTTAACTGAAGCTCCAAGTGTTGTTCATGTCCCGAACACTCAATATAGTAACCAGCAACGGCAAGCGGCACAGCAATCGCAGAGCCAAGGGTTCTTTTCGAAGGAGTTGAACTTTTCGGAATATGGGCTAGACGGAAATGGCCTAAAGAACGAGAATTTGCATTCCTTGAAGCCGGAATCAGGTGAAATTTTGAACTTTGGGGAGAGCAAGAGGAACTCTTATGGTGGAAATGGGAATTTCTTTACAGGGCAGAGTCCATTCGTCGCAGAAGACAACAAAAAGAGGAAGTCACCTACTTCCAAGGGCAGTAACGATGAAGGAATGCTCTCGTTCACTTCCGGTGTGATTTTGCCTGCTTCTAATATGAAGTCCACCGGCGGCGGTGGCGGAGATTCTGAACACTCGGATCTCGAAGCTTCGGTGGTGAAGGAAGCGGATAGCAGCAGAGTGGGAGAACTAGAAAAGCGACCTCGCAAAAGAGGGCGAAAGCCGGCGAATGGCAGGGAGGAGCCTCTGAATCACGTGGAAGCAGAGAGGCAGAGGAGAGAGAAGCTGAATCAGAGGTTCTACGCACTTCGTGCGGTGGTCCCAAACGTGTCAAAAATGGACAAAGCATCTCTCCTGGGCGACGCCATATCTTACATCAACGAGCTCAAGTCGAAGATCCAGAATCTAGAATTAAACACTAATGATTTGCAGAAGCAGTTGGATTCTGTCAAGAAGGAACTCGAGCTGGCCACTAGCAAAGATTCTCGCGCGCCTTCACCTGATAAAGAGCGAAAGGCCTCCAACAACCAGGCAAACAGCAAGCTAATAGATTTGGATATCGATGTGAAGATCATCGGGTGGGATGCAATGATTCGAATCCAATGCAGCAAGAGGAACCACCCAGCAGCAAGATTGATGGCCGCCTTACAGGAGCTAGACCTGGAAGTGAACCACGCGAGCGTGTCGGTCGTTAATGACCTGATGATCCAACAAGCGACAGTGAAGATGGGGAGTCGATTTTACACGCAGGAGCAGCTCCGGTTAGCACTCGCATCCAAGGTCGGAGATGCCCGATAG 2043 0.5135 MTDYRSPPTMNLWTDDNSSVMEAFMSSDLSVLWPPPPQPQSSASNTTPGPDPTKPLSQFQSSTSLFNQETLQRRLQALIEGARESWTYAIFWQSSYDYSGSSFLGWGDGYYKGEEDKGKGKAKTLSSRAEQEHRKKVLRELNSLISGSSAPSDDAVDEEVTDTEWFFLVSMTQSFVNGDGLPGQAFYNSAPVWITGGERLAASTCERARQGQVFGLRTLVCIPSANGVVELGSTELIFQNSDLMNKVKVWFNFNNPEIGSWPLMAPNADQGENDPSSLWLNDPSSGIEIRDSTNTTVPASVPSSNNSHNIQTIAKPMQFETPVSSTLTEAPSVVHVPNTQYSNQQRQAAQQSQSQGFFSKELNFSEYGLDGNGLKNENLHSLKPESGEILNFGESKRNSYGGNGNFFTGQSPFVAEDNKKRKSPTSKGSNDEGMLSFTSGVILPASNMKSTGGGGGDSEHSDLEASVVKEADSSRVGELEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKIQNLELNTNDLQKQLDSVKKELELATSKDSRAPSPDKERKASNNQANSKLIDLDIDVKIIGWDAMIRIQCSKRNHPAARLMAALQELDLEVNHASVSVVNDLMIQQATVKMGSRFYTQEQLRLALASKVGDAR 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1501 680 CDD bHLH_AtAIB_like 492 568 - -
Prci10g1501 680 MobiDBLite consensus disorder prediction 462 505 - -
Prci10g1501 680 MobiDBLite consensus disorder prediction 428 454 - -
Prci10g1501 680 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 498 564 IPR036638 GO:0046983
Prci10g1501 680 MobiDBLite consensus disorder prediction 44 59 - -
Prci10g1501 680 MobiDBLite consensus disorder prediction 571 585 - -
Prci10g1501 680 PANTHER MYC 46 675 IPR045084 GO:0003700|GO:0006355
Prci10g1501 680 MobiDBLite consensus disorder prediction 571 592 - -
Prci10g1501 680 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 495 544 IPR011598 GO:0046983
Prci10g1501 680 Pfam Helix-loop-helix DNA-binding domain 499 544 IPR011598 GO:0046983
Prci10g1501 680 MobiDBLite consensus disorder prediction 29 59 - -
Prci10g1501 680 Coils Coil 541 575 - -
Prci10g1501 680 SMART finulus 501 550 IPR011598 GO:0046983
Prci10g1501 680 FunFam Transcription factor bHLH13 488 562 - -
Prci10g1501 680 Gene3D - 487 574 IPR036638 GO:0046983
Prci10g1501 680 MobiDBLite consensus disorder prediction 401 505 - -
Prci10g1501 680 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 71 251 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1501 Prci-Chr10 10229874 10232384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1501 1 677 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 55.187 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci10g1501 bHLH-MYC_N 4.2e-55 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1501 K13422 - vvi:100250607 918.687