Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1500 ATGGCGTCCGACAGCTTCGCCGACAAGAATGCTGTCTTCAGAAAACTCAAGGCAAAGTCCGATAATAAGATGTGTTTCGATTGCAATGCAAAGAATCCAACTTGGGCGTCGGTTACATATGGGATCTTCCTCTGCATCGATTGCTCGGCTGTTCATCGCAGCCTTGGTGTGCACGTCAGCTTCGTGAGATCTACGAATTTAGACTCATGGACTCCTGAGCAGCTGAGAACAATGTGCTTTGGAGGAAACAATCGTGCAAATGTTTTCTTTAAGCAACATGGCTGGACTGATGGTGGAAAAATTGAGGCCAAGTATACTTCTAGAGCTGCAGAGTTGTATAGACAACTTCTCTCCAAGGAAGTAGCTAAAAGTATGGCTGAGGAGGCAGGTTTGCCATCCTCACCTGTTGCTTCTCAGTCTACACAAGTGGCTAACGGACTTCCTGAAGTCAGGACCAATGAACCACTAAAAGAGAACATTTTGGAAAAGCCAGAAATTCCTGAGGGCACTGCTTCCCCTAAAGCTTCTCATACAACAGTTTCCAGTACTGTCAAGAAACCTATTGGTGCCAAAAAAGGTGGCAAGACTGGGGGCCTTGGTGCACGGAAGCTTGCTAAAAAGCCAAGTGAATCTCTATACGAGCAGAAGCCAGAAGAAGCACCTGCTCCCGTTTCTTCATCAACAAGCCATGCTTTGGCAGCTGGGCCACCCTTGACATCTCGGTTTGAGTATGTTGAAAATGTCCAGTTATCTGAGTCAAACTCAGGAGGTTCTCACATACTTAATCATGTGGCTCCACCAAAGTCATCTAGCTTTTTTGCTGATTTTGGCATGGACAGCGGCTTCCCAAAACGGTCGGGGTCGAATTCCTCAAAAATACAAATTGAGGAATCTGATGAAGCAAGGAAGAAGTTCTCAAATGCTAAATCTATATCCTCAGCCCAATTTTTTGGAGATCAGAGCAAAGCTGCAGATGTGGACAGTCAAGTTACTTTGGCAAAGTTTTCGGGTTCAACTGCCATCTCTAGTGCAGATCTTTTTGGTCACTCAACAGATCCCTCCATTGATATCACTGCAAGTGATCTCATCAATCGACTGTCTTTCCAGGCACAGCAGGATATCTCTTCTATCAAAAACATTGCAGGAGAGACTGGGAAGAAGCTGAGTTCTTTGGCATCCACTTTGATAACAGATCTTCAGGACAGAATCCTCTAA 1215 0.4519 MASDSFADKNAVFRKLKAKSDNKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHVSFVRSTNLDSWTPEQLRTMCFGGNNRANVFFKQHGWTDGGKIEAKYTSRAAELYRQLLSKEVAKSMAEEAGLPSSPVASQSTQVANGLPEVRTNEPLKENILEKPEIPEGTASPKASHTTVSSTVKKPIGAKKGGKTGGLGARKLAKKPSESLYEQKPEEAPAPVSSSTSHALAAGPPLTSRFEYVENVQLSESNSGGSHILNHVAPPKSSSFFADFGMDSGFPKRSGSNSSKIQIEESDEARKKFSNAKSISSAQFFGDQSKAADVDSQVTLAKFSGSTAISSADLFGHSTDPSIDITASDLINRLSFQAQQDISSIKNIAGETGKKLSSLASTLITDLQDRIL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1500 404 CDD ArfGap_ArfGap2_3_like 8 123 - -
Prci10g1500 404 SUPERFAMILY ArfGap/RecO-like zinc finger 11 124 IPR037278 -
Prci10g1500 404 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Prci10g1500 404 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Prci10g1500 404 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Prci10g1500 404 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Prci10g1500 404 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Prci10g1500 404 MobiDBLite consensus disorder prediction 129 233 - -
Prci10g1500 404 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Prci10g1500 404 MobiDBLite consensus disorder prediction 133 148 - -
Prci10g1500 404 Gene3D Arf GTPase activating protein 1 137 IPR038508 -
Prci10g1500 404 Pfam Putative GTPase activating protein for Arf 12 110 IPR001164 GO:0005096
Prci10g1500 404 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1500 Prci-Chr10 10196748 10203092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1500 13 91 C2H2 Transcription Factor Family AT4G21160 46.250 2.59e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1500 K12493 K11855 gmx:100785169 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g1500 10 10196748 10203092 Prci10g1500 10 10196748 10203092 ECH