Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1483 ATGGCCACTTTAGAATCTGGACTCACAGTCTTGGGGTCTTTCCGCTGTTCTAATAAGCACTCTTCATCTGCCAAACCCTTCGATTGGATAAAGCTCAACGTCTCCACTTCTCTTTTTCCCATTTCCTACAGCTGCGCCGTCCCTTCAATTTTATCGTCCATCGACTCCAGCCCAAGGCACTGCTTCGAATTATGCTCTGCGCTGAAAGAGGCGGCAACAGAAGAAAAACCTCAGCAAACCCAGGAAACCAACATAAAAAAGAAGCTCTGCGTGTTTAATCTACCATGGTCACTATCTGCCGTGGACATCAAGAACCTCTTTGGTCAATGCGGAACTGTAACCGACGTCGAGATTATAAGAAGCAAAGATGGGAAGAGCAGAGGATTTGCCTTCATCACTATGGCTTCCGGGGAAGAGGCTGAGGCTGCTATTGATAAATTTGACTCTCATGAATTGTCTGGCAGGATAATAAGGGTAGAGCTTGCAAAGAGATTCAAGAAACCTCCTCCTCCAGCTCCTCCTAAAAGCCTCCCTCCTGGTGAAACAAGCCATAAAATTTATGCGTCCAATCTTGCATGGAAAGCAAGATCTAGTCATCTCAGAGCATTCTTCACAGAGAATTTCAAATCACCGGTTTCGGCCAGGGTTGTCTTTGACAGCCCTAATGGAAGATCTGCTGGGTATGGATTTGTTTCTTTTGCTACTAGGGATGAAGCAGAGGCGGCCATTTCTTCTCTGGATGGGAAGGAATTAATGGGACGACCACTGCGCCTAAAATTCAGTGAAAGGACCGTTACAGATTCTGGGGATGAGAAAGTGGAAGAGCTAGGTTCTGATGATGAACCGGCAGAACCAGGGAAAGCGGAAGGTCAAGGTTCTAATGATGAACCGACAGAATCATAG 903 0.464 MATLESGLTVLGSFRCSNKHSSSAKPFDWIKLNVSTSLFPISYSCAVPSILSSIDSSPRHCFELCSALKEAATEEKPQQTQETNIKKKLCVFNLPWSLSAVDIKNLFGQCGTVTDVEIIRSKDGKSRGFAFITMASGEEAEAAIDKFDSHELSGRIIRVELAKRFKKPPPPAPPKSLPPGETSHKIYASNLAWKARSSHLRAFFTENFKSPVSARVVFDSPNGRSAGYGFVSFATRDEAEAAISSLDGKELMGRPLRLKFSERTVTDSGDEKVEELGSDDEPAEPGKAEGQGSNDEPTES 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1483 300 CDD RRM_SF 89 160 - -
Prci10g1483 300 MobiDBLite consensus disorder prediction 261 300 - -
Prci10g1483 300 Gene3D - 170 271 IPR012677 -
Prci10g1483 300 PANTHER OS02G0815200 PROTEIN 65 262 - -
Prci10g1483 300 SUPERFAMILY RNA-binding domain, RBD 75 169 IPR035979 GO:0003676
Prci10g1483 300 SUPERFAMILY RNA-binding domain, RBD 167 264 IPR035979 GO:0003676
Prci10g1483 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 263 IPR000504 GO:0003723
Prci10g1483 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Prci10g1483 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 257 IPR000504 GO:0003723
Prci10g1483 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 157 IPR000504 GO:0003723
Prci10g1483 300 Gene3D - 66 169 IPR012677 -
Prci10g1483 300 SMART rrm1_1 88 160 IPR000504 GO:0003723
Prci10g1483 300 SMART rrm1_1 185 259 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1483 Prci-Chr10 10049293 10052566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1483 68 263 Eukaryotic Initiation Factors Gene Family AT4G34110 29.952 6.33e-19 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1483 - - qsa:O6P43_025150 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g1483 10 10049293 10052566 Prci10g1483 10 10049293 10052566 ECH