Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1482 ATGGCTGTGCTTGGCAACCCAAAAACTTGGATTCCCTACGTCAACATCAGAGATTGCTCCCAAGGTTTTTGCAGTGCCTACTGTCCACAGTGGTGTTACATAGTGCTTCCTCCACCTCCTCCTCCTGCACTCGATTTCCCTCAAGATGACAATTCGTCCCCAAATTTCTCTCCGCTCGTCATAGCCATAATTGGGATCTTGGCCAGTGCTTTCCTTCTGATAAGTTATTACACTTTCATTTCCAAGTACTGTGGAAACAGAGGATCTTCAGACACAGAAAATCTTCATCCAAGTGATGAGATTGAAGATAATCACAACCCTTCGTTGCACGAGCCGTGGCATGTCCAGACCAATGGGTTAGATGAGGCTCTGATAAAGTCCATCACAGTGTGTAAGTACAAGAGAGGAGATGGGTTGGTTGGAGTCACAGATTGCTCTGTTTGTCTCAGTGAGTTTCGAGAAGATGAACAAGTCAAACTGTTGCCTAAATGCAGCCACGCTTTTCACCTTCCGTGTATTGACGAGTGGCTCAAATCTCACCCTAATTGCCCTCTCTGTCGTGCTCTTATATTCACCTTCAACGCCCCGGCCCCTCAAGTGATTCCACCTGTGACACAAGAATCTTCCTCGGGAAACGAATCTTCGAGGGAAATTCAGAGTGCCAGTGATGAAATCAGAGGGTTTGGAAGAAGAAACGTTGAAACAGTTGGGGATGTCGAAGAAGGAGGTCCGAAGCCTGCGTTGCGTGCTTTTAGCGATCTGGGTTTTCTAGGAGGGAGGCATAGAATGATTGAGATGATTAGAGATGAAGGGGATGGAGACGATGAAGCCATAAGAAGGTCGGTGTCGATGGATCATCAAGCGCTTCAAATTGGAGGATCAAACGAAGCAGGACCTTCAAAGAGATCACAAGGAGAGAGTAGCAAGTCTAGCAGCAGCAGAAGGGTTCTGCATTGTGTTTTGAGTCCAATCACAATGAAGAGATCGTTTTCCAGTGGAAGATTCTCGTTTCGCAGAAATGGCAGAGCAAGGCAGGGGATTATCCCTGTCTGA 1053 0.4691 MAVLGNPKTWIPYVNIRDCSQGFCSAYCPQWCYIVLPPPPPPALDFPQDDNSSPNFSPLVIAIIGILASAFLLISYYTFISKYCGNRGSSDTENLHPSDEIEDNHNPSLHEPWHVQTNGLDEALIKSITVCKYKRGDGLVGVTDCSVCLSEFREDEQVKLLPKCSHAFHLPCIDEWLKSHPNCPLCRALIFTFNAPAPQVIPPVTQESSSGNESSREIQSASDEIRGFGRRNVETVGDVEEGGPKPALRAFSDLGFLGGRHRMIEMIRDEGDGDDEAIRRSVSMDHQALQIGGSNEAGPSKRSQGESSKSSSSRRVLHCVLSPITMKRSFSSGRFSFRRNGRARQGIIPV 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1482 350 CDD RING-H2_EL5-like 144 187 - -
Prci10g1482 350 FunFam RING-H2 finger protein ATL54 120 193 - -
Prci10g1482 350 PANTHER RING-H2 FINGER PROTEIN ATL16 45 318 IPR044600 GO:0016567|GO:0016740
Prci10g1482 350 MobiDBLite consensus disorder prediction 290 315 - -
Prci10g1482 350 Pfam Ring finger domain 144 187 IPR001841 -
Prci10g1482 350 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Prci10g1482 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 192 IPR013083 -
Prci10g1482 350 SUPERFAMILY RING/U-box 144 193 - -
Prci10g1482 350 MobiDBLite consensus disorder prediction 203 229 - -
Prci10g1482 350 SMART ring_2 145 186 IPR001841 -
Prci10g1482 350 MobiDBLite consensus disorder prediction 203 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1482 Prci-Chr10 10045672 10047318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1482 6 350 C3H Transcription Factor Family AT5G17600 40.160 5.36e-67 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1482 - - gmx:100792267 426.787