Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1481 ATGGCACTGCTTGAGACTCTTGCATCTAATGAGCTTTTCAACTTCATTATCCATGACACTATCTCTGCAACGCCATTTAGTCACCATGATTCCTCCTCGGAAGCTAATGTCTTGTTAGAAAACAGAGTTAATCCTCTGGAACATGACCCTGCGCTGTTCAGTAATCTCTCTTCTTCAAGGAAACGCCATTCTGATGAGCTTCAGGTGCCTATTGTGCAAGGGAGGAAGAAGAGGAGAAGGAAGCCGAGGGTTTGTAAGAACAAAGAAGAAGCTGAGACTCAGAGAATGACCCACATTGCAGTTGAACGAAACCGCCGCAAGCAGATGAATGAGCATCTCGCAGTCCTGCGTTCACTCATGCCTGAATCCTATGTTCAAAGGGGTGACCAGGCTTCTATAGTTGGTGGTGCTATAGAATTTGTGAAGGAGCTTGAGCATCTGTTGCAGTCACTTGAAGCTAAGAAGTTGCAGCTTCTGCAACAAGAAGTAGCACAAACTAATGAAGAGTCTTCTTCTTCTTCCATTTTCAAACTCATGAGTCCCCCTTTTGCACAATTCTTTGCGTATCCTCAGTACACATGGTCTCAGGCTCCTACCAAATACCCATCCAAGACTAAAGCAGCCATAGCTGATATTGAGGTCACCTTGATAGAGACTCATGCAAACCTTAGAATTCTCTCACGGAGAAGCCCCAGACAATTGTCGAAGCTGGTCTCTGGTTTCCAAACACTCTACCTCACCATCCTCCATCTTAATGTCACCACCATCGACCTGGTGCTTTATTCTATCAGTGCCAAGGTTGAAGAAGGATGCCGCCTTGGTTCGGCGGAGGATATAGCGACAGCAGTTCATCACTTGCTCAGAAGAATTGAGGAAGAAGACTCCCTTTGCGTTTGA 897 0.4582 MALLETLASNELFNFIIHDTISATPFSHHDSSSEANVLLENRVNPLEHDPALFSNLSSSRKRHSDELQVPIVQGRKKRRRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLEAKKLQLLQQEVAQTNEESSSSSIFKLMSPPFAQFFAYPQYTWSQAPTKYPSKTKAAIADIEVTLIETHANLRILSRRSPRQLSKLVSGFQTLYLTILHLNVTTIDPXVLYSISAKVEEGCRLGSAEDIATAVHHLLRRIEEEDSLCV 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1481 299 Pfam Helix-loop-helix DNA-binding domain 94 145 IPR011598 GO:0046983
Prci10g1481 299 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 92 162 IPR036638 GO:0046983
Prci10g1481 299 Coils Coil 141 161 - -
Prci10g1481 299 MobiDBLite consensus disorder prediction 64 92 - -
Prci10g1481 299 PANTHER MAX DIMERIZATION, MAD 30 294 - -
Prci10g1481 299 SMART finulus 99 150 IPR011598 GO:0046983
Prci10g1481 299 CDD bHLH_AtFAMA_like 96 155 - -
Prci10g1481 299 Gene3D - 85 165 IPR036638 GO:0046983
Prci10g1481 299 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 93 144 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1481 Prci-Chr10 10031069 10033314 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1481 85 268 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 58.696 5.33e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci10g1481 HLH 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1481 - - pvu:PHAVU_003G284500g 410.994