Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1468 ATGAGGGATGCAGGAGAGTCGGAATTGTCAGAGGAACAGCTGAGTATAAATGATCAATTGCAAGGGGACGAGTTACTTGCATTGGAGTCAATTTATGGAGAAGATGTCTTCAACCTCGAGAGATGGAAAGCTCTCCGATGTTTTCAGATACGCATACACATTGAAGTTTTAGATGAAATTTCCATCACAGCTAAGCTGAATTCTACTAATGAGCATAGGACTGCTAGCACCAATGCAGATGACTTCTCATACTCTTTTGAAGTTCAATATCTTCCACCTATTATTTTGACATGTTTATTGCCAAGGTCATACCCAAGCCATCAACCACCGCTTTTTATAATTTCTGTTAAGTGGTTGGACTCCACAAGAATTTCTAGCCTATGCTCTATGTTGGATTCAATATGGACTGAGCAGCAAGGGCAGGAAGTTATATACCAGTGGGTAGAATGGTTACATGGTTCTTCTCTTTCTCATCTGGGATTTGAGAAAGAGATTACTCTTGGTCCTTATGGCATGAAACATGTTGGAGATGAGCGCGCAGTCTCAGGAGCTGTGTCCCTAGAGTTTGATATTCCATCATTACAAAATTACAACAATGAGAGAGATCACGAGAACTTCCTTAAAGAAATGCATGAATGCTGCATTTGCTTCAGTGTATATGCAGGTACAGAGTTTGCTCAATTATCGTGTCTGCATTATTTTTGCCTAAAATGCTTGAAGACTTTTGCCCAGATGCATGTCAAAGAAGGCACCATCAATAATCTTCAATGTCCCAATTCAAAATGTGCTGTTATGATTCCACCTGGTCTGTTAAAACGCTTGCTTGATGATAAAGAGTATGAACGCTGGGAATCTTTGATGTTGGAGAAAACACTTGCATCAATGTCTGATGTTGCTTATTGCCCAAGATGTGAAACTCCTTGTATAGAAGATGAAGAACAGCATGCTCAATGCTCTAGATGCTTCTTTAGCTTTTGTACCCTTTGTAGGGAGCGACGCCATGTTGGCATAGCATGCATGACCCTAGACATGAAACTCAAAATTTTACAAGAACGCCAGAATTCATCTCAATTAAAGGATGCTCAGAAGCTGAGGGAACGTGAAATGATTAATGAAATGCTCAGCATCAAAGAAATTCATCGCGATTCTAAGCTATGCCCTTCTTGTCAAATGGCTATTTCCCGAACTGAAGGTTGCAATAAAATGGTTTGCGGTAATTGTGGTCAATATTTCTGTTACCGCTGCAACAAAACACTTGATGAATCTGATCCTTACGGACATTTCAGGGATGGGTACTGTGACTTGTTCCCACAAGAAGAGGCTTGGCAAGAACGCATAAACTACCGTCAAGTGGTAGGACAGTTACAAGCTGAACTCTTTTTTCAACGTGGCCAGCGATGTCCTAATTGTCGTCAATTTAATGCAAAGGTGATTGTTAGGCGTAGCACGCAGCATTATGGACCCAAGGGTTGCAAACAGCACTCCGATGATTAG 1494 0.4103 MRDAGESELSEEQLSINDQLQGDELLALESIYGEDVFNLERWKALRCFQIRIHIEVLDEISITAKLNSTNEHRTASTNADDFSYSFEVQYLPPIILTCLLPRSYPSHQPPLFIISVKWLDSTRISSLCSMLDSIWTEQQGQEVIYQWVEWLHGSSLSHLGFEKEITLGPYGMKHVGDERAVSGAVSLEFDIPSLQNYNNERDHENFLKEMHECCICFSVYAGTEFAQLSCLHYFCLKCLKTFAQMHVKEGTINNLQCPNSKCAVMIPPGLLKRLLDDKEYERWESLMLEKTLASMSDVAYCPRCETPCIEDEEQHAQCSRCFFSFCTLCRERRHVGIACMTLDMKLKILQERQNSSQLKDAQKLREREMINEMLSIKEIHRDSKLCPSCQMAISRTEGCNKMVCGNCGQYFCYRCNKTLDESDPYGHFRDGYCDLFPQEEAWQERINYRQVVGQLQAELFFQRGQRCPNCRQFNAKVIVRRSTQHYGPKGCKQHSDD 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1468 497 FunFam RBR-type E3 ubiquitin transferase 208 292 - -
Prci10g1468 497 SMART ring_2 213 260 IPR001841 -
Prci10g1468 497 SMART ring_2 386 470 IPR001841 -
Prci10g1468 497 SMART ibrneu5 368 433 IPR002867 GO:0008270
Prci10g1468 497 SMART ibrneu5 281 339 IPR002867 GO:0008270
Prci10g1468 497 Gene3D - 354 469 - -
Prci10g1468 497 ProSiteProfiles TRIAD supradomain profile. 209 438 IPR044066 -
Prci10g1468 497 CDD BRcat_RBR_RNF14 292 343 - -
Prci10g1468 497 Pfam RWD domain 20 152 IPR006575 GO:0005515
Prci10g1468 497 SUPERFAMILY RING/U-box 208 292 - -
Prci10g1468 497 ProSitePatterns Zinc finger RING-type signature. 230 239 IPR017907 -
Prci10g1468 497 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 67 472 IPR031127 GO:0004842|GO:0016567
Prci10g1468 497 Gene3D Ubiquitin Conjugating Enzyme 9 159 IPR016135 -
Prci10g1468 497 FunFam RBR-type E3 ubiquitin transferase 354 461 - -
Prci10g1468 497 SUPERFAMILY UBC-like 17 152 IPR016135 -
Prci10g1468 497 ProSiteProfiles Zinc finger RING-type profile. 213 261 IPR001841 -
Prci10g1468 497 FunFam RBR-type E3 ubiquitin transferase 9 160 - -
Prci10g1468 497 SUPERFAMILY RING/U-box 281 344 - -
Prci10g1468 497 SMART RWD2001b 23 158 IPR006575 GO:0005515
Prci10g1468 497 SUPERFAMILY RING/U-box 372 428 - -
Prci10g1468 497 CDD Rcat_RBR_RNF14 371 431 IPR047548 GO:0008270
Prci10g1468 497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 296 IPR013083 -
Prci10g1468 497 ProSiteProfiles RWD domain profile. 23 158 IPR006575 GO:0005515
Prci10g1468 497 Pfam IBR domain, a half RING-finger domain 281 339 IPR002867 GO:0008270
Prci10g1468 497 Pfam IBR domain, a half RING-finger domain 376 419 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1468 Prci-Chr10 9882357 9887790 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1468 177 445 C3H Transcription Factor Family AT2G31770 25.632 1.61e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1468 K11971 - gmx:100500662 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g1468 10 9882357 9887790 Prci10g1468 10 9882357 9887790 ECH