Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1455 ATGGTGGAAAGAAGACTTTCTTTATCCAAGGAAGTTAGACTTGGGCTAGAATTCTTGAAGCGTAAAAGGCTTCAACGGGCAAAACTCATTACTGCCCCTGAAACAACTGTTGCTAGCACAATGACTAGAAGTGGGGGAGATGCTTTAAGAGCTTCAGCTTCATGTGGTGCCCGATTGCATGGCAATGCAGATGTCTTCTCCAAGCGGAAGGTGGATAAGTTTGAGACAAGTGATCTTGAATGGACTGAGAAAATTCCAGAATGTCCTGTGTATTCTCCAACGAAGGAGGAATTTGAGGATCCGCTGGTTTACTTGCAAAAGATAGCTCCAGAAGCTTCAAAATATGGCATATGCAAGATTATTTCACCTTTGAGTGCTTCTGTTCCTGCTGGAGTTGTTTTAATGAAGGAAAAAGCAGGATTCAAGTTTACAACTAGAGTACAGCCTCTTCGGCTTGCTGAGTGGGACACTGAAGACAAAGTCACATTTTTCATGAGTGGAAGCAATTATACATTCCGTGATTTTGAGAAAATGGCGAATAGAGTTTTTGCACATAGATATTCTAGTGCTGGATCTCTTCCTCCCACATTTATGGAAAAAGAGTTTTGGCATGAAATTGCTTGTGGACAGATGGAAACTGTTGAATATGCGTGTGATGTTGATGGTAGTGCTTTTTCATCTTCTCCTACTGATCAGCTTGGGAACAGCAAATGGAATTTAAAGAAAGTTTCACAGTTGCCCAAGTCCATTTTGCGCCTCTTGGAAACCACAATTCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTCTTCAGTGTGTTTGCTTGGCATGTGGAGGATCATTATTTGTATAGTATAAATTATCATCACTGTGGGGCATCAAAAACTTGGTACGGCATTCCAGGTCACGCAGCATTGGATTTTGAAAGGGTGGTGAGAGAGTATGTGTACTCTAAAGATATTCTTTCAAGTGATGGGGAAGATGGAGCCTTTGATGTTCTTCTGGGGAAAACAACTCTGTTCCCTCCAAATGTTTTGTTGGATAATGAAGTCCCCGTCTATAAGGCTGTTCAAATGCCAGGGGAGTTTGTAATAACTTTTCCCAGAGCATATCATGCTGGATTTAGTCATGGTTTCAACTGTGGAGAAGCAGTGAACTTTGCAATTGGTGATTGGTTTCCTTTAGGAGCTATTGCTAGCCAGCGATATGCACATCTTAACAGGATGCCTCTGCTGCCTCACGAAGAACTTCTATGCAAAGAAGCAATGCTTCTTCACACAAACTTAGAACTTGAAGATTCAGACTTTCCCTCTGCAGATCTTTTGGCTCATAATTGCATAAGGATTTCTTTTGTGAATCTAATGCGCTTTCAGCATTGTGCTCGTTGGCTCCTAATGAAATTAAGGGCTTGTTCGAGTGTTTCTCCACATTCCCACAGCACAATTCTCTGTAGCCTCTGCAAACGCGATTGTTATGTTGCATATGTAGACTGTGAGTGTCGCATGCACCCGGTGTGCCTTCGCCATGAAATTGAAGCTCTTGGCTTCACCTGTGGTAGCGAACACACTCTTCATGTGCGGGAGGATATTAATGATCTGGAAGCTGCAGCCAAGAGGTTTGAGCGGGAAGATGGAATCGTGGATGAGATTCTTAAGCAAACCAAGGGTGACAATAACATGTATTCATATCCTTTGTCAAATATGTTCCAGAGAGCTGAAGCAAATGGATATACTCCTTACTGCGAGATAGAATTTGATCCTGTTATTGAACATTATTCAACCCCAGATCAGGCAACAAGTAATCCAGAGGGCAATTTACAAAGTCAACTTGTTTTGAGCCATTGCCCAGATGTTCAACCAGGATTTTGCGAGGCTTCTTTTTCTTCTGCTGCATACACCCTCTGTTCTCTTTCAGAACCTATTGATAGCTCTCCTCCTGTGAAAAATGACGATGGGCATGCTTATTTTACTTCAGGCTCTATTGACTCTGAACAATGTTTTGAAGGAGTGTCTAATAGCACATGCCAATCTTTACTATCCTCAGCGCGCTATCACGACATCTCAAGCAAACCTCAGCGCGATCTTGAATTCGAGACGACACCCGTTGTAGATGAAGAGGATAACGATTCTGATTCAGAAATATTCAGGGTAAAGCGGCCATCTTCTCTGAAGGCAGAGAAGAGAAATTTGAATGCTACCATGTCTTCCAAGCATTTTGACCAACAGGGGCTTAAACGATTGAAGAGAGTTGTTCATGAAGGAAGTAGCCCGCCGCAGCCAATGGATTGCAGTAGAAGCAGTGATTCAAGTAACAAATTTAGTCACCCGATAAAACGGAAATGGGAGGGTGAAAGATCGGTGAAGGACAAATTTGCAGGGGGAAATAGCATCCCCATTTCTGTCAGGTATAAGAAGTTGGGCAGTGAGGGAGTTAGTAGAGAACGAGACATGCACAGGAAAGATAGGTTCCAGCAGGCCATTGGCGAACGGCCTCCCTTAGAGATTGGGCCCAAGCGCCTTAAAGTCCGAGGCCCTTCGTTGTTGAGCTTAGAGGGTCCCGGTTTCGCCCCAAAATGGTAG 2583 0.434 MVERRLSLSKEVRLGLEFLKRKRLQRAKLITAPETTVASTMTRSGGDALRASASCGARLHGNADVFSKRKVDKFETSDLEWTEKIPECPVYSPTKEEFEDPLVYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDKVTFFMSGSNYTFRDFEKMANRVFAHRYSSAGSLPPTFMEKEFWHEIACGQMETVEYACDVDGSAFSSSPTDQLGNSKWNLKKVSQLPKSILRLLETTIPGVTEPMLYIGMLFSVFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALDFERVVREYVYSKDILSSDGEDGAFDVLLGKTTLFPPNVLLDNEVPVYKAVQMPGEFVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASQRYAHLNRMPLLPHEELLCKEAMLLHTNLELEDSDFPSADLLAHNCIRISFVNLMRFQHCARWLLMKLRACSSVSPHSHSTILCSLCKRDCYVAYVDCECRMHPVCLRHEIEALGFTCGSEHTLHVREDINDLEAAAKRFEREDGIVDEILKQTKGDNNMYSYPLSNMFQRAEANGYTPYCEIEFDPVIEHYSTPDQATSNPEGNLQSQLVLSHCPDVQPGFCEASFSSAAYTLCSLSEPIDSSPPVKNDDGHAYFTSGSIDSEQCFEGVSNSTCQSLLSSARYHDISSKPQRDLEFETTPVVDEEDNDSDSEIFRVKRPSSLKAEKRNLNATMSSKHFDQQGLKRLKRVVHEGSSPPQPMDCSRSSDSSNKFSHPIKRKWEGERSVKDKFAGGNSIPISVRYKKLGSEGVSRERDMHRKDRFQQAIGERPPLEIGPKRLKVRGPSLLSLEGPGFAPKW 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1455 860 PANTHER LYSINE-SPECIFIC DEMETHYLASE 80 768 - -
Prci10g1455 860 Pfam C5HC2 zinc finger 485 536 IPR004198 -
Prci10g1455 860 Pfam JmjC domain, hydroxylase 265 388 IPR003347 -
Prci10g1455 860 Coils Coil 524 544 - -
Prci10g1455 860 SMART cupin_9 235 405 IPR003347 -
Prci10g1455 860 MobiDBLite consensus disorder prediction 809 828 - -
Prci10g1455 860 ProSiteProfiles JmjC domain profile. 235 405 IPR003347 -
Prci10g1455 860 Pfam jmjN domain 89 121 IPR003349 -
Prci10g1455 860 SUPERFAMILY Clavaminate synthase-like 224 421 - -
Prci10g1455 860 FunFam Lysine-specific demethylase isoform A 83 432 - -
Prci10g1455 860 MobiDBLite consensus disorder prediction 753 776 - -
Prci10g1455 860 MobiDBLite consensus disorder prediction 809 841 - -
Prci10g1455 860 Gene3D Cupin 81 410 - -
Prci10g1455 860 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
Prci10g1455 860 SMART JmjN_1 87 128 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1455 Prci-Chr10 9788208 9795357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1455 85 424 JUMONJI Transcription Factor Family AT2G34880 36.591 6.06e-62 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Prci10g1455 JmjC 1.4e-37 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1455 - - gmx:100798611 1315.06