LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci10g1405	ATGCCTAGCCGGGAAAACTCATTGATGTATCTTCACCTTCTCATCCTGGTGATTATTTCTCCCCTGTTCTTCAGCTGCATCGTCGTGTTTGCAGAAACCAACACTCTGAATCAATCCGACTCACTCAACTTCACCGGTCGCTTGGTTTCCAACAACCAGAATTTCACCCTAGAATTCGTCAAACCTATTCCCTTCAGCAACAACACTTACTTGGCCATCTGGAATTCGTACGAATCATCCTCGTACCCTGTTTGGCTAGCCAACAGAGACAACCCAATCACTGACGGTTCTGCAACTCTCTTCATCGACAACACCGGAAAGTTTGTGATCAATCAGACTCATGGTGACCCAATTCAATTGTGCCCTGGCGAAGCCGCGACCAACAGCACCACCAACACAAAGGCTGTGTTGCTCGACAATGGAAATCTTGTACTGACAGAAGTGAATTCCGATGGATCTGTCGGGAGAACCTTGTGGCAGAGCTTTGACTGTCCCACTGACCATCTGTTACCTGGCATGAAACTAGGGATCAATCACAGAACAGGAAGAAATTGGTCTCTCACTTCATGGCTGGCCTATGATGATCCATCTCCAGGAGCTTTCACACTCGAATGGGACCCTCATGGCTTAGAGTTAGTTCTTCGGCGAAGAGGGGTTGTTTTCTGGACCAGTGGTGGAACAACCTTGGGAAACATAGAACAATTGTCCCATAAAATACAATCTTATGAAATGTCATATACCAAAACTTCAGATGAAGAGTTCTTCAATTATTCACTGAAACAAGACCCTATGGATCCTGGGATTCATGAAAGCATAGAATGGATCTTAGATTACGAAGGTAGTATTTGGTTTAACAACGAGGAAGTGGCATTACAGGATTATTGTTATGGGTACGAGGAAGATGTGGGATGTGCAAAATGGGAACAGCTAGAGTGTAGGAGTGAGAATACGAGATTTGAGCTATTGTCTGGGTACTTTGTGAGTAAGAGAAATGGAAAATTCATTGATGGTGAGAGTGAAAGCATTGGGCCTGCTGATTGTAGAGCTAGTTGTTGGAATGACTGTAATTGTCAAGCATATCTCAAGAGCCGCAGCGTAGGTTGTGTCACATATCATCAAGAAGCAGAGTTCCAACTAGACCCATCTGGGAATTCGCAACAACATTTTGTTATCCAACAATCACAAAACAAAGGAAGGGACACAAAGAAAAGGATTGCAATTTCAGTTCCGATTTCATTGTTGTCAGTGTCTGTCATTGTCATTATCTTGTATCGGAGATGGAAAACAAAAGGGAGAAAAGAAGACCATCTACATCAATCGGAAACAACAAGCAGTAATTTGCACGATCCAAATGAGCTTGGATACGATGATGGCTTTTCTCAACATTTGAAAATGTTTACCTTTGTCTCTATTGTTGAAGCTACAGATGACTTTTCTGTACAAAATAAGCTTGGAGAAGGTGGTTTTGGCCCAGTTTATAAGGGAAAACTACCTGAAGGGGTAGAAATTGCAGTGAAAAGGCTATCAAGGAGTTCAGGACAAGGATTGGTGGAGTTTAAGAATGAATTGATACTCATAGCAAAACTACAACACAAGAATCTAGTACGTTTACTTGGATGCTGCATGCAATCTGAGGAAAAGATGTTAGTTTATGAATACATGCCCAATAAAAGTCTAGACTCCTTTCTCTTTGATGCATCCAAGAGGGCGGCATTAAATTGGAAAATTAGAGTGATGATTATTGAAGGGATTTCACAAGGACTTCTTTACCTTCATCAACATTCAAGATTAAGAATCATACACAGAGATTTGAAAACCAGTAACATATTACTTGATATAGACATGAATCCTAAAATTTCTGATTTTGGAATGGCAAGAATTTTCAAGGAGAATGAGTTCATAGCCAAGACGAACAGAATTGTTGGGACATAG	1932	0.413	MPSRENSLMYLHLLILVIISPLFFSCIVVFAETNTLNQSDSLNFTGRLVSNNQNFTLEFVKPIPFSNNTYLAIWNSYESSSYPVWLANRDNPITDGSATLFIDNTGKFVINQTHGDPIQLCPGEAATNSTTNTKAVLLDNGNLVLTEVNSDGSVGRTLWQSFDCPTDHLLPGMKLGINHRTGRNWSLTSWLAYDDPSPGAFTLEWDPHGLELVLRRRGVVFWTSGGTTLGNIEQLSHKIQSYEMSYTKTSDEEFFNYSLKQDPMDPGIHESIEWILDYEGSIWFNNEEVALQDYCYGYEEDVGCAKWEQLECRSENTRFELLSGYFVSKRNGKFIDGESESIGPADCRASCWNDCNCQAYLKSRSVGCVTYHQEAEFQLDPSGNSQQHFVIQQSQNKGRDTKKRIAISVPISLLSVSVIVIILYRRWKTKGRKEDHLHQSETTSSNLHDPNELGYDDGFSQHLKMFTFVSIVEATDDFSVQNKLGEGGFGPVYKGKLPEGVEIAVKRLSRSSGQGLVEFKNELILIAKLQHKNLVRLLGCCMQSEEKMLVYEYMPNKSLDSFLFDASKRAALNWKIRVMIIEGISQGLLYLHQHSRLRIIHRDLKTSNILLDIDMNPKISDFGMARIFKENEFIAKTNRIVGT	643

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci10g1405	643	Gene3D	-	27	163	IPR036426	-
	Prci10g1405	643	Pfam	PAN-like domain	340	374	IPR003609	-
	Prci10g1405	643	Pfam	D-mannose binding lectin	84	190	IPR001480	-
	Prci10g1405	643	SUPERFAMILY	alpha-D-mannose-specific plant lectins	82	196	IPR036426	-
	Prci10g1405	643	SUPERFAMILY	Protein kinase-like (PK-like)	456	643	IPR011009	-
	Prci10g1405	643	Pfam	Protein tyrosine and serine/threonine kinase	480	632	IPR001245	GO:0004672\|GO:0006468
	Prci10g1405	643	SMART	serkin_6	478	641	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci10g1405	643	ProSiteProfiles	Bulb-type lectin domain profile.	33	158	IPR001480	-
	Prci10g1405	643	Gene3D	Phosphorylase Kinase; domain 1	455	553	-	-
	Prci10g1405	643	Gene3D	Transferase(Phosphotransferase) domain 1	554	643	-	-
	Prci10g1405	643	CDD	B_lectin	48	165	IPR001480	-
	Prci10g1405	643	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	26	-	-
	Prci10g1405	643	SMART	blect_4	33	165	IPR001480	-
	Prci10g1405	643	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase B120	554	643	-	-
	Prci10g1405	643	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230	443	553	-	-
	Prci10g1405	643	PANTHER	BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN	22	633	-	-
	Prci10g1405	643	ProSiteProfiles	Protein kinase domain profile.	478	643	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci10g1405	643	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	599	611	IPR008271	GO:0004672\|GO:0006468
	Prci10g1405	643	ProSiteProfiles	PAN/Apple domain profile.	312	394	IPR003609	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci10g1405	Prci-Chr10	9378410	9382191	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci10g1405	398	643	Receptor kinase-like Gene Family	AT4G04500	51.600	1.43e-76	251

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Prci10g1405		PK_Tyr_Ser-Thr	2.1e-33	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci10g1405	-		-	pcin:129322789	985.326