Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1375 ATGGTACTTGACAGATGTGATCTGATTGGAGAACCTGTTGCTGCGCCAAGAGCTGCACCTGCATCATCTTCCACTGATCAGTCTGGAGCTAACACAGGAAATCCTCAGTCTTTAACCAGTACTTCACCTGCAGGTGGCAACATTGCTAGACCGAATGTGACTGGGCCATCTCTAGATCATTCACAAATCAATCACAATAACAATGGTGCAAGATATGGTGCTGCAAATGCCCCTCCTTCATTGCCTAAAACAGAGCCTAGAGCTACACCTACTTTACCAAAATCAGGGCCATCAAGTGGGTCCTATGGTGAACATAACATGGGATTTTGCAATCCTCGACCGGAAACTCCAAGACCCCCACAAAATGCCTATATTCATCCACCACAGCCTATGCATAGACAGCCATCTCCAATTTACAATAACAGGGGACCAATATCCAGAAATGAAGCTTTGCCAAGGATAATTCCAATAGCTGCATTGAACCCATACCAAAACATGTGGACAATTAAGGCTAGAGTTACATCAAAGGCAAGCCTCAGGCAGTACAACAATGCCAGAGGTGATGGCAAAGTGTTTTCTTTTGATCTTCTTGACTCTGATGGTGGAGAAATTCGTGCAACTTGCTTTAATGCAGTGGCTGAACAGTTCTATCGTCTAGTTGAAGTTGGTAAAGTATATCTGATTTCCAGGGGGAGTATAAAGCCGGCTCAAAAAAATTTTAATCATCTTCCTAATGATCAAGAACTGACCCTTGATCTGACATCCATCATACAGCCATGCCTTGATGATGACAAATCAATTCCAATGCGTCTTTTTAATTTTCGTCCAATTAGTGATGTTGAAAGCATGGAAATTTCGAGTGTTGTGGATGTGATTGGTGTGGTATTTTCTGTCAGTCCTACAACCTCAATCATGAGAAAAAATGGTACTGAAACTCAGAAGAGAGCCCTCCAGTTGAAGGACATGTCTGGCTGTAGTGTTGAATTAACCCTATGGGGAGATTTTTGTAGTGCAGAAGGACAACGGTTGCAGAATACTTGTGACTCAGGTGCATTTCCAGTTTTGGCTGTGAAAGCTGCCAGGGTAAATGAATTCAATGGGAAGGCCCTTGGGACCATAGTCAATAGTCAGCTATTTATAGATCCTGATTTTCCTGAGGCTTACAGGTTGAAAGAATGGTTTGACAAGGAAGGGAGGAACGTACCAACTATTTCTATTTCCAGAGAATCATTCAATGCTGGTAAGAATGATATGAGGAAGACTATATCTCAGATTAAAGATGAGAAGTTAGGGACTTCAGAGAAGCCTGATTGGATTAGCATCTGTGCAAGTGTTTCATTCATTAAGGCCGACTCATTCTGCTATACAGCCTGTCCCATCATGATAGGTGATAGGAAATGTAGCAAAAAGGTGTCCAATAATGGAGACGGAAAGTGGAGGTGTGATAGATGTGACCAGTATGTTGATGCATGTGAATATAGGTATATACTGCAACTCCAAATACAGGACCACACTGGGCTAACATGGGTAACTGCATTTCAGGAGTGTGGTGAGGAGATAATGGGCTTACCTGCCAAAGATCTTTATTATATGAAATATGAAGATCAGGACGATGAAAGATTTGCACAAGTCATCCGTAAGGTTCTTTTTACTAAATACATATTCAAGTTAAAAGTTAAGGAAGAGACATTTGGTGATGAACAACGTGTGAAGTCAACAGTGGTGAAAGCAGAGAAGGTTAACTTTTCATCTGAATCAAGATTTCTTTTGGATTTGATTGATAAGCTTAAAGCTGAAAAGGTAGAAGGTATCAATCCTCATTCTCTAATCAGTAATACTGGACATCAGAGTGTTGGAACTGGCCTGGCAATGCCACCAGCTTATAATCCTATAAATAGCAACAGTGGTGCGAGTAGAGAATATGGGATGCCAGCAAATCAAGTGGGTCAGTATGAGCACCAATATAGGAGTTCTTTTGCTTCAGCTGGGTCTTCTAGTTCATTTATGCCTTGCAGCAATTGTGGAGGCTCTGGCCATAGCTCTATGCATTGCCCGAACATTGCAAGTTTGCCTCGACAGTCCATGGGAGGAGGGGCCTTTGCAAATAGGGTATCTTCTGGGGCAGGTGTTAGTGTTGCAACTGGTGAATGCTTTAAATGTCATCAAACTGGTCACTGGGCACGAGACTGTCCTGGTCTCAACGTAGCAGCCCCTTCAGCTTATGGAAGTAGTGTTGTTCATGGAGGACATGGGTTTGTTCAAAGGCAACAGCTTGGCGGATTTTGA 2286 0.4252 MVLDRCDLIGEPVAAPRAAPASSSTDQSGANTGNPQSLTSTSPAGGNIARPNVTGPSLDHSQINHNNNGARYGAANAPPSLPKTEPRATPTLPKSGPSSGSYGEHNMGFCNPRPETPRPPQNAYIHPPQPMHRQPSPIYNNRGPISRNEALPRIIPIAALNPYQNMWTIKARVTSKASLRQYNNARGDGKVFSFDLLDSDGGEIRATCFNAVAEQFYRLVEVGKVYLISRGSIKPAQKNFNHLPNDQELTLDLTSIIQPCLDDDKSIPMRLFNFRPISDVESMEISSVVDVIGVVFSVSPTTSIMRKNGTETQKRALQLKDMSGCSVELTLWGDFCSAEGQRLQNTCDSGAFPVLAVKAARVNEFNGKALGTIVNSQLFIDPDFPEAYRLKEWFDKEGRNVPTISISRESFNAGKNDMRKTISQIKDEKLGTSEKPDWISICASVSFIKADSFCYTACPIMIGDRKCSKKVSNNGDGKWRCDRCDQYVDACEYRYILQLQIQDHTGLTWVTAFQECGEEIMGLPAKDLYYMKYEDQDDERFAQVIRKVLFTKYIFKLKVKEETFGDEQRVKSTVVKAEKVNFSSESRFLLDLIDKLKAEKVEGINPHSLISNTGHQSVGTGLAMPPAYNPINSNSGASREYGMPANQVGQYEHQYRSSFASAGSSSSFMPCSNCGGSGHSSMHCPNIASLPRQSMGGGAFANRVSSGAGVSVATGECFKCHQTGHWARDCPGLNVAAPSAYGSSVVHGGHGFVQRQQLGGF 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1375 761 MobiDBLite consensus disorder prediction 1 118 - -
Prci10g1375 761 SUPERFAMILY Nucleic acid-binding proteins 272 401 IPR012340 -
Prci10g1375 761 Gene3D - 405 596 IPR012340 -
Prci10g1375 761 Gene3D - 266 404 IPR012340 -
Prci10g1375 761 NCBIfam replication factor-a protein 1 (rpa1) 133 595 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Prci10g1375 761 Pfam Replication factor-A C terminal domain 438 589 IPR013955 -
Prci10g1375 761 Pfam Replication protein A OB domain 277 381 IPR031657 -
Prci10g1375 761 Gene3D - 152 260 IPR012340 -
Prci10g1375 761 Pfam Zinc knuckle 716 731 IPR001878 GO:0003676|GO:0008270
Prci10g1375 761 PANTHER REPLICATION FACTOR A 1, RFA1 167 577 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Prci10g1375 761 MobiDBLite consensus disorder prediction 91 105 - -
Prci10g1375 761 ProSiteProfiles Zinc finger CCHC-type profile. 671 686 IPR001878 GO:0003676|GO:0008270
Prci10g1375 761 SMART c2hcfinal6 670 686 IPR001878 GO:0003676|GO:0008270
Prci10g1375 761 SMART c2hcfinal6 716 732 IPR001878 GO:0003676|GO:0008270
Prci10g1375 761 SUPERFAMILY Nucleic acid-binding proteins 419 596 IPR012340 -
Prci10g1375 761 ProSiteProfiles Zinc finger CCHC-type profile. 717 731 IPR001878 GO:0003676|GO:0008270
Prci10g1375 761 FunFam Replication protein A subunit 153 263 - -
Prci10g1375 761 FunFam Replication protein A subunit 405 596 - -
Prci10g1375 761 SUPERFAMILY Nucleic acid-binding proteins 154 267 IPR012340 -
Prci10g1375 761 CDD RPA1_DBD_A 156 258 - -
Prci10g1375 761 FunFam Replication protein A subunit 266 404 - -
Prci10g1375 761 SUPERFAMILY Retrovirus zinc finger-like domains 705 733 IPR036875 GO:0003676|GO:0008270
Prci10g1375 761 Gene3D - 664 746 - -
Prci10g1375 761 CDD RPA1_DBD_C 422 595 IPR047192 -
Prci10g1375 761 CDD RPA1_DBD_B 288 395 - -
Prci10g1375 761 MobiDBLite consensus disorder prediction 20 73 - -
Prci10g1375 761 Pfam OB-fold nucleic acid binding domain 167 255 IPR004365 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1375 Prci-Chr10 9193731 9197336 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1375 30 697 Core DNA Replication Machinery Family AT5G45400 55.443 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1375 K07466 - qsa:O6P43_033421 1018.84