Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1362 ATGGCCGACGACAATCCTCCTCTCTTCGCCAGCAACATCTCCGTCGTACTCATTGCCATTGGCTCCGCCGCCTTCGTCGTCACAATGTACCATCTAATTGCCGTTTGCCTCTGCGGCCACCAATTCACTGACCCTAACTCGGACCATCGGCCGCACCGCAATGTTCACGGAGCCGGACCAACGCCGGAGGCGTCGAGCTTCACAGACGAGAGTTCCTTGGCGCAGCTTATTCCGGCTCACAAGTACAAGAAGCAGATAGACGATGAAGTCGAAGGTGCTCGGGAGGTGACCTGTGCGGTGTGCTTGGGAGATTTCGAGGAAGGCGAAGAGGTGAGAACGTTGCCAGAGTGCTCGCACTCTTTTCACGTGCCTTGCATAGATATGTGGCTGTTCTCTCACCCGAATTGTCCCGTCTGCCGCGCCGATGCCATGCCATCTCCGGAGGTTCTAAGCGCTGTGTCGGAGTGTGTTCCCGGCGAATCGAACGCGCATGAGCACCGGATAGATATTGTGCAAAATGCTTTGATCCAGAGTGTCTTTTTGCGACGGTGA 552 0.5598 MADDNPPLFASNISVVLIAIGSAAFVVTMYHLIAVCLCGHQFTDPNSDHRPHRNVHGAGPTPEASSFTDESSLAQLIPAHKYKKQIDDEVEGAREVTCAVCLGDFEEGEEVRTLPECSHSFHVPCIDMWLFSHPNCPVCRADAMPSPEVLSAVSECVPGESNAHEHRIDIVQNALIQSVFLRR 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1362 183 SUPERFAMILY RING/U-box 85 146 - -
Prci10g1362 183 CDD RING-H2_EL5-like 98 140 - -
Prci10g1362 183 SMART ring_2 98 139 IPR001841 -
Prci10g1362 183 MobiDBLite consensus disorder prediction 49 70 - -
Prci10g1362 183 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Prci10g1362 183 Pfam Ring finger domain 97 140 IPR001841 -
Prci10g1362 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 147 IPR013083 -
Prci10g1362 183 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 13 144 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1362 Prci-Chr10 9106561 9107588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1362 15 163 C3H Transcription Factor Family AT5G17600 36.709 2.00e-23 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1362 - - aip:107639941 169.088