Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1329 ATGGGATCCAGTGGTAGCAAAGCCGTTACTTCTTGCAATTCATCGTCCACGTCGTCGTCTTCACGCAGCTTTCGTAAGGGTCGATCTAGAGGGCATAGAGGTTTTCAGTCGTATTGTTTAGGAACAACATCTAGATCTCATGACAGTGACAATGACGACCAGGTGTGTGATGAGAATAAAGATAATGATAGTAATGTTACGTACACCAATGGTGATGAAACAGATGCTGATGAGCTGATATCAGAGTCATTCAGAAAGATTAAATCTGATAAAAAACCAGGTCTCTCAATATTTAACGATGGAGATGTCCTTAATCCGCAGCCTGGACCTACTGGAAGCTTGGCTAATCAAAATGAAGCTCTACAACGTGGTGATTTGATTCCTGCATCACATTGCTATGAAGACACTTCTATCAATTTAAGGTCTAACATCCCTTCATCAGATTCCAATGGCAACTTGCAAAACAACCCAATGAGTTCTTCCATGCAGAATATGATTAGAGATGAAGATGGTCCTAGAGAAGGGCTAAATCTTAACTTGTTTTCTCCAAGAATTCATGCCAGAACAGAAAATGTTGAGATTAGACATAATGACCGCCGAAATGGAGCTCAAGAACCTGTTGAGCGGAATGTTCGCTTTAGTCGTACTTTGAGTGTTGGAAGGCTTCGTGATAGAGTTCTTCGTCGATCAACAATATCAGACTTCACCTTTTGCCCACTGCAGCAAGAGAGGGATGCAAGCGATGCTAGTCAAGATATTGGAAGACAAGCAGTGGGGAGAGAGCCAAGAGGACTACCATCTGATGGTGACTCTACAAGTTCCTCTTCTATATCTGGTTATCCTTCATCCAATATGTCTAGTTCCCTGTTTGGCACCCAAGACTATGAGGTTGAGTCTTCACGATCAAGAGAAGCTAGGCATCGTGATCTACTGGAAAATAGATCCAATTTCCTAGAACGGAGAAGAAGAATACGATCCCAGGTCCGTGCTCTTCAACGACTGGGAAGCCGATTTGAAAACCTGTCTGGGCATGACAGGTCATGTATTTTGTCTGGCCAACATAGAAATGGTCGTTGTACATGCCGAATTAGTAGTCGTGACACCAATTCAAATGATGATACTGGTGCTAGAGCTAGCATATCAAGAATTGTTATGCTTGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCAGTGGTTTTATCTTCACGCCCTTCTGTTTCTTCTATTGGATCTGTTCCTGCACCTTATGAAGTTGTTGAGTCCTTGCCTGTCAAATCATACACTAAGTTGCATAAGCATCAAGAGGATGCTGCTCAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGCGAGTACTACCATGTCACCATGAATTTCATCTAACATGCATAGACAAGTGGCTAAAGGAGATTCACAGGGTATGCCCACTATGCCGGGGGGACATCTGCATTGCTGATTCAATACCAGCCTAG 1494 0.4297 MGSSGSKAVTSCNSSSTSSSSRSFRKGRSRGHRGFQSYCLGTTSRSHDSDNDDQVCDENKDNDSNVTYTNGDETDADELISESFRKIKSDKKPGLSIFNDGDVLNPQPGPTGSLANQNEALQRGDLIPASHCYEDTSINLRSNIPSSDSNGNLQNNPMSSSMQNMIRDEDGPREGLNLNLFSPRIHARTENVEIRHNDRRNGAQEPVERNVRFSRTLSVGRLRDRVLRRSTISDFTFCPLQQERDASDASQDIGRQAVGREPRGLPSDGDSTSSSSISGYPSSNMSSSLFGTQDYEVESSRSREARHRDLLENRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRISSRDTNSNDDTGARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPYEVVESLPVKSYTKLHKHQEDAAQCYICLVEYEDGDSMRVLPCHHEFHLTCIDKWLKEIHRVCPLCRGDICIADSIPA 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1329 497 MobiDBLite consensus disorder prediction 267 296 - -
Prci10g1329 497 ProSiteProfiles Zinc finger RING-type profile. 444 486 IPR001841 -
Prci10g1329 497 SUPERFAMILY RING/U-box 422 492 - -
Prci10g1329 497 SMART ring_2 444 485 IPR001841 -
Prci10g1329 497 Pfam Ring finger domain 443 486 IPR001841 -
Prci10g1329 497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 490 IPR013083 -
Prci10g1329 497 MobiDBLite consensus disorder prediction 1 77 - -
Prci10g1329 497 MobiDBLite consensus disorder prediction 257 305 - -
Prci10g1329 497 FunFam Putative RING zinc finger domain superfamily protein 413 491 - -
Prci10g1329 497 MobiDBLite consensus disorder prediction 46 60 - -
Prci10g1329 497 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 94 496 - -
Prci10g1329 497 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1329 Prci-Chr10 8899266 8904486 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1329 156 493 C3H Transcription Factor Family AT5G45290 58.790 1.71e-116 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1329 - - gmx:100786091 564.688