Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1328 ATGGGATCCAGTGGTAGCAAAGCCGTTACTTCTTGCAATTCATCGTCCACGTCGTCGTCTTCACGCAGCTTTCGTAAGGGTCGATCTAGAGGGCATAGAGGTTTTCAGTCGTATTGTTTAGGAACAACATCTAGATCTCATGACAGTGACAATGACGACCAGGTGTGTGATGAGAATAAAGATAATGATAGTAATGTTACGTACACCAATGGTGATGAAACAGATGCTGATGAGCTGATATCAGAGTCATTCAGAAAGATTAAATCTGATAAAAAACCAGGTATCCCTCCTAATGTCCACCATGATGAGTGGAGTCAAACAACCATTTCCAACACTGCATCTAGAACTGGTAGTAGTTCTGATCGTCCAGCTCCAACTCAGTCTTTGAACCCTTCAAGCCGATTCCTTTCTCGATTTAGCCTTATTCCTGGGAACATAAGCTTCAGACTAAGCAGAACCACAAGTTTGGGGTCATCACAACCTTGCCCTGTTTCTTCTGCAGGTCTCTCAATATTTAACGATGGAGATGTCCTTAATCCGCAGCCTGGACCTACTGGAAGCTTGGCTAATCAAAATGAAGCTCTACAACGTGGTGATTTGATTCCTGCATCACATTGCTATGAAGACACTTCTATCAATTTAAGGTCTAACATCCCTTCATCAGATTCCAATGGCAACTTGCAAAACAACCCAATGAGTTCTTCCATGCAGAATATGATTAGAGATGAAGATGGTCCTAGAGAAGGGCTAAATCTTAACTTGTTTTCTCCAAGAATTCATGCCAGAACAGAAAATGTTGAGATTAGACATAATGACCGCCGAAATGGAGCTCAAGAACCTGTTGAGCGGAATGTTCGCTTTAGTCGTACTTTGAGTGTTGGAAGGCTTCGTGATAGAGTTCTTCGTCGATCAACAATATCAGACTTCACCTTTTGCCCACTGCAGCAAGAGAGGGATGCAAGCGATGCTAGTCAAGATATTGGAAGACAAGCAGTGGGGAGAGAGCCAAGAGGACTACCATCTGATGGTGACTCTACAAGTTCCTCTTCTATATCTGGTTATCCTTCATCCAATATGTCTAGTTCCCTGTTTGGCACCCAAGACTATGAGGTTGAGTCTTCACGATCAAGAGAAGCTAGGCATCGTGATCTACTGGAAAATAGATCCAATTTCCTAGAACGGAGAAGAAGAATACGATCCCAGGTCCGTGCTCTTCAACGACTGGGAAGCCGATTTGAAAACCTGTCTGGGCATGACAGGTCATGTATTTTGTCTGGCCAACATAGAAATGGTCGTTGTACATGCCGAATTAGTAGTCGTGACACCAATTCAAATGATGATACTGGTGCTAGAGCTAGCATATCAAGAATTGTTATGCTTGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCAGTGGTTTTATCTTCACGCCCTTCTGTTTCTTCTATTGGATCTGTTCCTGCACCTTATGAAGTTGTTGAGTCCTTGCCTGTCAAATCATACACTAAGTTGCATAAGCATCAAGAGGATGCTGCTCAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGCGAGTACTACCATGTCACCATGAATTTCATCTAACATGCATAGACAAGTGGCTAAAGGAGATTCACAGGGTATGCCCACTATGCCGGGGGGACATCTGCATTGCTGATTCAATACCAGCCTAG 1716 0.4336 MGSSGSKAVTSCNSSSTSSSSRSFRKGRSRGHRGFQSYCLGTTSRSHDSDNDDQVCDENKDNDSNVTYTNGDETDADELISESFRKIKSDKKPGIPPNVHHDEWSQTTISNTASRTGSSSDRPAPTQSLNPSSRFLSRFSLIPGNISFRLSRTTSLGSSQPCPVSSAGLSIFNDGDVLNPQPGPTGSLANQNEALQRGDLIPASHCYEDTSINLRSNIPSSDSNGNLQNNPMSSSMQNMIRDEDGPREGLNLNLFSPRIHARTENVEIRHNDRRNGAQEPVERNVRFSRTLSVGRLRDRVLRRSTISDFTFCPLQQERDASDASQDIGRQAVGREPRGLPSDGDSTSSSSISGYPSSNMSSSLFGTQDYEVESSRSREARHRDLLENRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRISSRDTNSNDDTGARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPYEVVESLPVKSYTKLHKHQEDAAQCYICLVEYEDGDSMRVLPCHHEFHLTCIDKWLKEIHRVCPLCRGDICIADSIPA 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1328 571 FunFam Putative RING zinc finger domain superfamily protein 487 565 - -
Prci10g1328 571 SMART ring_2 518 559 IPR001841 -
Prci10g1328 571 SUPERFAMILY RING/U-box 496 566 - -
Prci10g1328 571 MobiDBLite consensus disorder prediction 101 132 - -
Prci10g1328 571 MobiDBLite consensus disorder prediction 331 379 - -
Prci10g1328 571 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 482 564 IPR013083 -
Prci10g1328 571 ProSiteProfiles Zinc finger RING-type profile. 518 560 IPR001841 -
Prci10g1328 571 MobiDBLite consensus disorder prediction 46 60 - -
Prci10g1328 571 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 570 - -
Prci10g1328 571 MobiDBLite consensus disorder prediction 1 24 - -
Prci10g1328 571 MobiDBLite consensus disorder prediction 341 370 - -
Prci10g1328 571 MobiDBLite consensus disorder prediction 1 132 - -
Prci10g1328 571 Pfam Ring finger domain 517 560 IPR001841 -
Prci10g1328 571 MobiDBLite consensus disorder prediction 78 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1328 Prci-Chr10 8899266 8904649 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1328 230 567 C3H Transcription Factor Family AT5G45290 58.790 1.73e-115 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1328 - - gmx:100786091 756.518