Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1292 ATGAATGAAAGTAAAAACGGAGATGGTGCCACAGATGCGGTCGATGTGCCTGATATCGAGAAGCAGGACATTCGAGAGAGTAACCTATGCTTAAGCGGTGGGGAGGATGTAAAATCGATTGCGGTTTCCCCAATTAAGGGTTACTTGTCCAGGTCTGGAAGTTCCCAAGAACAATGCAGAATATGTCAGCAAGAAAAAGAAGAAAGTTTGATAGATCTTGGATGTCAATGTCGGGGTGGACTAGCAAAAGCACATCGACCATGCATAGAAACTTGGTTTCGCACAAGAGGATCAAACATATGTGAGATCTGCCAGCAAGTGGCTCAGAATGTGTCACCTCCCGAATCCCAGCCAAATGCCGATTACTGGGTATGGAGGATTGACCCGACAATGAGGACACAGGATCGTGAAAGGGGATGTTTTAGTCCTCTTTGGGTTGCATTTTCGATTCTCATTGGTGGTCTCTTGTTGGATGTGCTCATATCCATCACATTTGGTGTCTCTGCACTACCTGTAAATATAATAATTGGTGTTATCATTGTCCTTGGACTTGGCACTGCACTTCGGCTGGCCCTAGAATTCTGCCATGAGTGGGGCTTGAGGAGAGCTGTACAGAGGGTGGAAACTAATGTGAGTCATGGGTACCACCCTGCTGTATGTTGGTTGGCTTGCGTTCACCAGCCATTGACAATGGTCTCCCCCATTGCCTTTGTTTGTTCTCAACCCTTGTGGAGTCTTGTCTTCGTGCTTGAAGAAATACTACCAGCTCTGCTTTGTACAGGATCCTGCAAGTCTCAATATGCACTGCTACCACAACTTAACTTTGCAAACCTCAATAGTGAAGCAAGTGATGGAGGAACCCAGACGGTTGTACTTAAAGTAAGGATGTGCTGCACTGGGTGTGAAAGGGTTGTAAAAAACGCCATTTACAAGCTCAAAGGAATTGATTCAGTGGAAGTGGAACTAGAGATGGAGAGGGTAACTGTTGTTGGATATGTCGATAGAAACAAAGTGCTTAAGGCAGTTAGAAGAGCAGGGAAGAGGGCTGAGTTTTGGCCATACCCTAATCCACCACTCTACTTCACGTCTTCTTACAATTATTTCAACGACACGGCAAGTGATTTCAAAGAGAGCTACAATTACTACAGACATGGCTACAATATGGCAGACAAGCATGGCACCATACATGTATCTCAACGTGGGGATGACAAAGTTAGCAACTTTTTCAACGATGATAATGTCAATGCTTGCTCTGTTATGTAA 1263 0.4481 MNESKNGDGATDAVDVPDIEKQDIRESNLCLSGGEDVKSIAVSPIKGYLSRSGSSQEQCRICQQEKEESLIDLGCQCRGGLAKAHRPCIETWFRTRGSNICEICQQVAQNVSPPESQPNADYWVWRIDPTMRTQDRERGCFSPLWVAFSILIGGLLLDVLISITFGVSALPVNIIIGVIIVLGLGTALRLALEFCHEWGLRRAVQRVETNVSHGYHPAVCWLACVHQPLTMVSPIAFVCSQPLWSLVFVLEEILPALLCTGSCKSQYALLPQLNFANLNSEASDGGTQTVVLKVRMCCTGCERVVKNAIYKLKGIDSVEVELEMERVTVVGYVDRNKVLKAVRRAGKRAEFWPYPNPPLYFTSSYNYFNDTASDFKESYNYYRHGYNMADKHGTIHVSQRGDDKVSNFFNDDNVNACSVM 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1292 420 ProSiteProfiles Zinc finger RING-CH-type profile. 51 111 IPR011016 GO:0008270
Prci10g1292 420 Pfam Heavy-metal-associated domain 292 347 IPR006121 GO:0046872
Prci10g1292 420 SUPERFAMILY RING/U-box 54 108 - -
Prci10g1292 420 CDD HMA 291 350 IPR006121 GO:0046872
Prci10g1292 420 Pfam RING-variant domain 59 104 IPR011016 GO:0008270
Prci10g1292 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 115 IPR013083 -
Prci10g1292 420 Gene3D - 274 352 - -
Prci10g1292 420 SMART ringv_2 58 105 IPR011016 GO:0008270
Prci10g1292 420 SUPERFAMILY HMA, heavy metal-associated domain 284 356 IPR036163 GO:0046872
Prci10g1292 420 CDD RING_CH-C4HC3_MARCH 59 105 - -
Prci10g1292 420 PANTHER ZINC FINGER, RING-CH-TYPE 46 175 - -
Prci10g1292 420 ProSiteProfiles Heavy-metal-associated domain profile. 287 350 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1292 Prci-Chr10 8540208 8550863 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1292 56 111 C3H Transcription Factor Family AT2G37950 52.542 2.76e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1292 - - csav:115716936 296.975