Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1237 ATGGGTGTTCCTCAAACTCCAACCACATCACCAAATCTGTATCCAGAAGAACTTCAGCTAAAACTATACCAGGCCTTCATTTTCTCGATTCCAATTCTATTTTCTATCATTCTCTTTCTCTTGTTTTATTTGTTCTACCTCAAGCGCAGGGCTTCCTCTCTTTCTTCCCCTCCACACTTTCTTCCCACCACTGCACCTTCAACTACCTATCATTCCACCCCTTGTCGTTTGGATCTGACCCCTCAGTTCCTTGACACTCTTCCAAAAGTTTTATTTGATGAAGAATTGAAAGCAAGAGATTCACAATGTTGTGTATGTCTTGGAGAATTTGAGATGAAAGAAGAGGTATTACAGTTCCCCCAATGCAAGCATGTATTTCACAGAGATTGCATATACCATTGGCTCCATTCACACTCCACTTGTCCACTGTGTAGGTGTTGTATCATCCCAGCCACTAAGTTTCTGAATCCACCAACCCTCCATACTCATCCTCCTCCTCTTGCAGATGAAGCTGCTTCAGCTTCTGCTTCTTCCAACTAA 540 0.4259 MGVPQTPTTSPNLYPEELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSPPHFLPTTAPSTTYHSTPCRLDLTPQFLDTLPKVLFDEELKARDSQCCVCLGEFEMKEEVLQFPQCKHVFHRDCIYHWLHSHSTCPLCRCCIIPATKFLNPPTLHTHPPPLADEAASASASSN 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1237 179 CDD RING-H2_EL5-like 102 145 - -
Prci10g1237 179 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Prci10g1237 179 SMART ring_2 103 144 IPR001841 -
Prci10g1237 179 Pfam Ring finger domain 102 145 IPR001841 -
Prci10g1237 179 SUPERFAMILY RING/U-box 82 162 - -
Prci10g1237 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 150 IPR013083 -
Prci10g1237 179 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 12 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1237 Prci-Chr10 8151522 8153859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1237 8 150 C3H Transcription Factor Family AT4G10150 42.466 5.61e-36 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1237 K19039 - pvu:PHAVU_002G300500g 223.016