Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1220 ATGGAAGCGGATTTCGTGTCCAGTGGCATGCTCATAGAAGAACCCTCTGAGGCTGATGACAATGCGAACACTGATAATTTATTTATTGACGGGGAAAGATGTGGAATTTGCATGGATATTGTCATTGACAGGGGAGTTCTGGATTGCTGTCAACACTGGTTCTGTTTTGCATGCATTGACAACTGGGCTACCATCACAAATCTCTGCCCGCTTTGCCAGAATGAGTTTCAGTTGATCACATGTGTTCCAGTATATGATACGATTGGAAGCAGTAAGATCGAAGATGACATGTTATCAAGAGATGATGACTGGTCCATTGAAGGGAAGAATAACACTCTGTCATTTCCCTCATACTATATTGATGAAAATGCAGTTATTTGCTTGGATGGTGATGGCTGCAAAATTCGAAGTGGGTCAGCAACTATTGAAGGTGATTTGAGCCTTGATACATCAATTGCTTGTGATTCATGTGATATATGGTATCATGCTTTTTGTGTGGGATTTGATCCTGATGGTACATCTGATATTACATGGTTATGTCCGAGATGTGTGCCAGATAAAGTTACTGAGAACATGGATGCCAGTTCATTGGAGAAGACAGCTACGGAAATTAACCTAGAAAATGGTAACAAGGAATGTCAGGCTAAGGAATCTTTTTCACGAAAAGTTTCTGTATCTGTTGCTGATGCTGGAGAGACAGCTGTTGTTGTCTCTTTGGTTGATGGAAACCAATGGATTCCAGCATCAAGTGGGAAGGGTTTGTCACCCCTTGAAGCTAGCAAGAATCCAATGACTGAATCATGTGTTTCTGTATCTGACGCAAATAATCACCAAAGTAATACAGAGGAGACTATTAATTCACCAACGGAGCAACAGGAGCTGGAGCTATCCTTGTCACACAATGTGGTCTGTAGCTTGCCCTCTAACACCTTAGGGCTCGATGATTTGAAAAAAGGAACTTATGAAGAAATAAGTGATCCAAGCTGCTTAAGTGGAACCAAGATATTAAATGAATCCCATGACAGTGCTAGTACATCTAGATCTGATATGGGTCTTCATCTTGGTTTGTCAGTGGGCTCCTTTTTATGTGTTGATGGCACAGACATGAATGCAACAATAGATCAAGAAACTGATCTCCAGCAGTCAAGTTCAGAAGAATTTACTTTGAAAGGAGATGAAATGGAACAAAATGCTCTTATGGACAATGCCAGAGTAATGGATGGAAAGAGGAAGCATGCTGATTATAGTCATGATGAGGTTCATATAGAAGTTGATGGAGATGCCGAACTCAAGCCTGAAGTTGAAGTGTTGCAAAAGAAACTTAAAACTGATGGCACTCTACTGATTAATCACAAGAACCTAGCAGGCGCTCCTCTTTCAGATGATACTAAAACAAACCCTTCTACTAAACCTGTTTCCAGACATGACGATGGAAAGCATCATTCAACAAAGGAGAATGCTGCATCAGATATAATGAGTATAGTTAAAGGCACAAAGTGGAAGCCTCCAAAGGGAACTCCTGGCATCAAATCTTGTGATAAATTATCTGAAAACAATGAAAATATTGTGGGTTTGAGGGTAAAAAAGATCATGAAGAGAGCTCCTGATCATGAGGAGTCATCCTTAGTTCAAAACCTAAGGGAGGAAATTAGAGAAGCTGTCCGCAACAAATCCTCTAAAAATTTTGAAGCAAACCTTGTTGACACAAAGCTTCTTGCAGCATTCAGGGCTGCAGTAGCAGGGCCTAAACCTGAACCTGTAAATAAGCTGCCCACTATGGCTTTGAAGGCAAAGAAGTCAATGTTGCGGAAAGGTAAAGTTCGTGAACATCTAACTAGGAAAATTTTTGGGGCTTCAAATGGAAGAAGAAAGCGTGCCTGGGACAGGGACTGTGAAATTGAATTTTGGAAATATCGTTGCATGAGAGCATCGAAGCCTGAAAAGATTGAAACTTTGAAGTCAGTTCTGGATCTTCTGAGAAAAAGTTCTGGGAGTGCAGAAGCAAAAGAGGATCCTGACGGTCAGGCAAAAAATTCTATTCTTTCCAGGTTGTATTTAGCAGATACATCTGTTTTCCCGCGAAACAATGATGTCAGGCCACTTTCTGCCCTTGAAACTGCTGCTAACTCAGAGCAGAATAAAAAGCCTAACCTATCAGGAAAAGCATCAAATCAGTCTCTTGATAATAGTCTTGTCAAAGCAAAAGAGATAAATAAGGTTTTTCCAAAGGCCAGGGATTGCTCATCTGAAAATAAAGCAAATAAGAAGGTTGTACACAGCTCAGTTGGGGGTAATTCAGCTTCTGGGAAAGTACCTTCAAGCAGACAATCAGAAGGGGCAACAGGTTCTTACTCTGGTGGTTCCAGAGTTGACTTGAAGGAGTCATGCATTAAATCTGATTGTATAAAGAGTGACAAAAGAAAATGGGCCTTGGAGGTTCTTGCAAGAAAAGCAGCTTCTGCTGGCAAGAAAATGACAAATGACGGTCACGAAGATAATGCAATGCTTAAAGGAAATTATCCTTTGCTGGCCCAATTGCCAGCTGATATGAGACCAGTATTGGCACCTAGTCGCCACAATAAAATTCCTATATCAGTCAGGCAGACACAACTTTTACGGCTGACCGAACTCTTCTTGAGGAATGCAAATCTGTCGGTCATTCGCAGAACTGCAGATACAGAATTGGCTGTTGCAGATGCCATTAATATTGAAAAAGAGGTGGCTGACAGATCAAACAGCAAGCTAGTGTATCTGAATCTCTGTTCACAGGAGCTCTCTCACCGCTCAAATAACAGAAAATCCAATGGAGCAACAGATATAACTCCGCAGGTCTCATCAGCAGTCCCAACTGATAGATCAGAACACAATACTGAAGATGATCTTTCAACTGACTCTGCAGTTCAAATAGCCCTTAAAAATGCTGGTCTTTCGTCTGATTCTCCTCCTGGTAGTCCAAGTGAGAAAAGAGAAATATCCAATAGCGAAGATGATCTTTCAGGGCCTGATAATATTCTTGAACTGGATTCTCAAACAGATACGGATATTTATGGGGACTTTGAGTATGATTTGGAAGATGAAGATTACATCGGTGCAGGCGTTGCTAGAGGCTTAAATTCACAAGAAGAAGAAAGCGAGTCAAAAATGAAACTAATTTTCTCAACTATGAAGAGTTCAGATACGGCTTTGGATTGTATGGGCTCTGAGAGGTTGGAAAACAAGGAAGTTCCACGAGATGCCCCCTGCTCATCAGATCATGATGATGCAGGCAACAGGGACTCTGCAATTAATGCAGAGACTGGCGATCCTTCGGCTCCTTCCGAGGCCTTTCTCAGGGAGCCATGTGATGTAGAATGCGAGGAATTATATGGTCCAGAGAAAGAACCCCTGACAAAAAAATTTCCGAACGAGGAATTTTTAACATTACATGGAGAGGACAAGTCAGGAACGTCCTCTGAAGGCAATGACTGTCATAATGAAGAACAAGCATCAGACCAAGCAGTCAATGCATCTGTGTCTGGGAATGACAAACTTGCGAAGAATATGTGGGCGACTGCTATGACTGACAATTCATCTAATGTATCTGATAATAGTGAAAATTTACGGAGGAAGGGGGATAAATCTGACACTGCTGCTGAGCAGTCTGGCTCTGCAAATCATATAGTTAGAAAGGTTGAAGCTTATGTCAAGGAGCATGTCAGGCCACTGTGCAAGAGTGGTGTGATCACAGCTGAACAGTACAGGTGGGCTGTTGTAAAAACGGCGGAAAAGGTTATGAAGTACCATTGCAAAGCCAAGAATGCCAATTTCCTTATAAAGGAAGGTGAGAAAGTGAAGAAACTCGCAGAACAGTATGTTGAAGCTGCCCAACATAACAGAAAAAATTGA 3885 0.4154 MEADFVSSGMLIEEPSEADDNANTDNLFIDGERCGICMDIVIDRGVLDCCQHWFCFACIDNWATITNLCPLCQNEFQLITCVPVYDTIGSSKIEDDMLSRDDDWSIEGKNNTLSFPSYYIDENAVICLDGDGCKIRSGSATIEGDLSLDTSIACDSCDIWYHAFCVGFDPDGTSDITWLCPRCVPDKVTENMDASSLEKTATEINLENGNKECQAKESFSRKVSVSVADAGETAVVVSLVDGNQWIPASSGKGLSPLEASKNPMTESCVSVSDANNHQSNTEETINSPTEQQELELSLSHNVVCSLPSNTLGLDDLKKGTYEEISDPSCLSGTKILNESHDSASTSRSDMGLHLGLSVGSFLCVDGTDMNATIDQETDLQQSSSEEFTLKGDEMEQNALMDNARVMDGKRKHADYSHDEVHIEVDGDAELKPEVEVLQKKLKTDGTLLINHKNLAGAPLSDDTKTNPSTKPVSRHDDGKHHSTKENAASDIMSIVKGTKWKPPKGTPGIKSCDKLSENNENIVGLRVKKIMKRAPDHEESSLVQNLREEIREAVRNKSSKNFEANLVDTKLLAAFRAAVAGPKPEPVNKLPTMALKAKKSMLRKGKVREHLTRKIFGASNGRRKRAWDRDCEIEFWKYRCMRASKPEKIETLKSVLDLLRKSSGSAEAKEDPDGQAKNSILSRLYLADTSVFPRNNDVRPLSALETAANSEQNKKPNLSGKASNQSLDNSLVKAKEINKVFPKARDCSSENKANKKVVHSSVGGNSASGKVPSSRQSEGATGSYSGGSRVDLKESCIKSDCIKSDKRKWALEVLARKAASAGKKMTNDGHEDNAMLKGNYPLLAQLPADMRPVLAPSRHNKIPISVRQTQLLRLTELFLRNANLSVIRRTADTELAVADAINIEKEVADRSNSKLVYLNLCSQELSHRSNNRKSNGATDITPQVSSAVPTDRSEHNTEDDLSTDSAVQIALKNAGLSSDSPPGSPSEKREISNSEDDLSGPDNILELDSQTDTDIYGDFEYDLEDEDYIGAGVARGLNSQEEESESKMKLIFSTMKSSDTALDCMGSERLENKEVPRDAPCSSDHDDAGNRDSAINAETGDPSAPSEAFLREPCDVECEELYGPEKEPLTKKFPNEEFLTLHGEDKSGTSSEGNDCHNEEQASDQAVNASVSGNDKLAKNMWATAMTDNSSNVSDNSENLRRKGDKSDTAAEQSGSANHIVRKVEAYVKEHVRPLCKSGVITAEQYRWAVVKTAEKVMKYHCKAKNANFLIKEGEKVKKLAEQYVEAAQHNRKN 1294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1220 1294 MobiDBLite consensus disorder prediction 1073 1108 - -
Prci10g1220 1294 MobiDBLite consensus disorder prediction 927 951 - -
Prci10g1220 1294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 110 IPR013083 -
Prci10g1220 1294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 191 IPR013083 -
Prci10g1220 1294 SUPERFAMILY FYVE/PHD zinc finger 149 188 IPR011011 -
Prci10g1220 1294 MobiDBLite consensus disorder prediction 468 486 - -
Prci10g1220 1294 Pfam Ring finger domain 33 73 IPR001841 -
Prci10g1220 1294 MobiDBLite consensus disorder prediction 1142 1169 - -
Prci10g1220 1294 MobiDBLite consensus disorder prediction 1142 1159 - -
Prci10g1220 1294 MobiDBLite consensus disorder prediction 708 727 - -
Prci10g1220 1294 MobiDBLite consensus disorder prediction 962 988 - -
Prci10g1220 1294 MobiDBLite consensus disorder prediction 1185 1217 - -
Prci10g1220 1294 MobiDBLite consensus disorder prediction 744 789 - -
Prci10g1220 1294 Pfam PHD-finger 149 185 IPR019787 -
Prci10g1220 1294 ProSiteProfiles Zinc finger PHD-type profile. 66 186 IPR019787 -
Prci10g1220 1294 Coils Coil 1278 1294 - -
Prci10g1220 1294 PANTHER RING FINGER PROTEIN 41, 151 115 1285 - -
Prci10g1220 1294 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Prci10g1220 1294 SMART ring_2 34 72 IPR001841 -
Prci10g1220 1294 SMART ring_2 124 183 IPR001841 -
Prci10g1220 1294 ProSiteProfiles Zinc finger RING-type profile. 34 73 IPR001841 -
Prci10g1220 1294 MobiDBLite consensus disorder prediction 1073 1092 - -
Prci10g1220 1294 SUPERFAMILY RING/U-box 25 79 - -
Prci10g1220 1294 MobiDBLite consensus disorder prediction 754 784 - -
Prci10g1220 1294 Coils Coil 543 563 - -
Prci10g1220 1294 MobiDBLite consensus disorder prediction 456 513 - -
Prci10g1220 1294 MobiDBLite consensus disorder prediction 927 1012 - -
Prci10g1220 1294 SMART PHD_3 132 184 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1220 Prci-Chr10 8060377 8076924 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1220 11 85 C3H Transcription Factor Family AT3G58030 29.870 8.74e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci10g1220 PHD 5.3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1220 - - gmx:100808102 1524.99