Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1219 ATGGAAGCGGATTTCGTGTCCAGTGGCATGCTCATAGAAGAACCCTCTGAGGCTGATGACAATGCGAACACTGATAATTTATTTATTGACGGGGAAAGATGTGGAATTTGCATGGATATTGTCATTGACAGGGGAGTTCTGGATTGCTGTCAACACTGGTTCTGTTTTGCATGCATTGACAACTGGGCTACCATCACAAATCTCTGCCCGCTTTGCCAGAATGAGTTTCAGTTGATCACATGTGTTCCAGTATATGATACGATTGGAAGCAGTAAGATCGAAGATGACATGTTATCAAGAGATGATGACTGGTCCATTGAAGGGAAGAATAACACTCTGTCATTTCCCTCATACTATATTGATGAAAATGCAGTTATTTGCTTGGATGGTGATGGCTGCAAAATTCGAAGTGGGTCAGCAACTATTGAAGGTGATTTGAGCCTTGATACATCAATTGCTTGTGATTCATGTGATATATGGTATCATGCTTTTTGTGTGGGATTTGATCCTGATGGTACATCTGATATTACATGGTTATGTCCGAGATGTGTGCCAGATAAAGTTACTGAGAACATGGATGCCAGTTCATTGGAGAAGACAGCTACGGAAATTAACCTAGAAAATGGTAACAAGGAATGTCAGGCTAAGGAATCTTTTTCACGAAAAGTTTCTGTATCTGTTGCTGATGCTGGAGAGACAGCTGTTGTTGTCTCTTTGGTTGATGGAAACCAATGGATTCCAGCATCAAGTGGGAAGGGTTTGTCACCCCTTGAAGCTAGCAAGAATCCAATGACTGAATCATGTGTTTCTGTATCTGACGCAAATAATCACCAAAGTAATACAGAGGAGACTATTAATTCACCAACGGAGCAACAGGAGCTGGAGCTATCCTTGTCACACAATGTGGTCTGTAGCTTGCCCTCTAACACCTTAGGGCTCGATGATTTGAAAAAAGGAACTTATGAAGAAATAAGTGATCCAAGCTGCTTAAGTGGAACCAAGATATTAAATGAATCCCATGACAGTGCTAGTACATCTAGATCTGATATGGGTCTTCATCTTGGTTTGTCAGTGGGCTCCTTTTTATGTGACATGAATGCAACAATAGATCAAGAAACTGATCTCCAGCAGTCAAGTTCAGAAGAATTTACTTTGAAAGGAGATGAAATGGAACAAAATGCTCTTATGGACAATGCCAGAGTAATGGATGGAAAGAGGAAGCATGCTGATTATAGTCATGATGAGGTTCATATAGAAGTTGATGGAGATGCCGAACTCAAGCCTGAAGTTGAAGTGTTGCAAAAGAAACTTAAAACTGATGGCACTCTACTGATTAATCACAAGAACCTAGCAGGCGCTCCTCTTTCAGATGATACTAAAACAAACCCTTCTACTAAACCTGTTTCCAGACATGACGATGGAAAGCATCATTCAACAAAGGAGAATGCTGCATCAGATATAATGAGTATAGTTAAAGGCACAAAGTGGAAGCCTCCAAAGGGAACTCCTGGCATCAAATCTTGTGATAAATTATCTGAAAACAATGAAAATATTGTGGGTTTGAGGGTAAAAAAGATCATGAAGAGAGCTCCTGATCATGAGGAGTCATCCTTAGTTCAAAACCTAAGGGAGGAAATTAGAGAAGCTGTCCGCAACAAATCCTCTAAAAATTTTGAAGCAAACCTTGTTGACACAAAGCTTCTTGCAGCATTCAGGGCTGCAGTAGCAGGGCCTAAACCTGAACCTGTAAATAAGCTGCCCACTATGGCTTTGAAGGCAAAGAAGTCAATGTTGCGGAAAGGTAAAGTTCGTGAACATCTAACTAGGAAAATTTTTGGGGCTTCAAATGGAAGAAGAAAGCGTGCCTGGGACAGGGACTGTGAAATTGAATTTTGGAAATATCGTTGCATGAGAGCATCGAAGCCTGAAAAGATTGAAACTTTGAAGTCAGTTCTGGATCTTCTGAGAAAAAGTTCTGGGAGTGCAGAAGCAAAAGAGGATCCTGACGGTCAGGCAAAAAATTCTATTCTTTCCAGGTTGTATTTAGCAGATACATCTGTTTTCCCGCGAAACAATGATGTCAGGCCACTTTCTGCCCTTGAAACTGCTGCTAACTCAGAGCAGAATAAAAAGCCTAACCTATCAGGAAAAGCATCAAATCAGTCTCTTGATAATAGTCTTGTCAAAGCAAAAGAGATAAATAAGGTTTTTCCAAAGGCCAGGGATTGCTCATCTGAAAATAAAGCAAATAAGAAGGTTGTACACAGCTCAGTTGGGGGTAATTCAGCTTCTGGGAAAGTACCTTCAAGCAGACAATCAGAAGGGGCAACAGGTTCTTACTCTGGTGGTTCCAGAGTTGACTTGAAGGAGTCATGCATTAAATCTGATTGTATAAAGAGTGACAAAAGAAAATGGGCCTTGGAGGTTCTTGCAAGAAAAGCAGCTTCTGCTGGCAAGAAAATGACAAATGACGGTCACGAAGATAATGCAATGCTTAAAGGAAATTATCCTTTGCTGGCCCAATTGCCAGCTGATATGAGACCAGTATTGGCACCTAGTCGCCACAATAAAATTCCTATATCAGTCAGGCAGACACAACTTTTACGGCTGACCGAACTCTTCTTGAGGAATGCAAATCTGTCGGTCATTCGCAGAACTGCAGATACAGAATTGGCTGTTGCAGATGCCATTAATATTGAAAAAGAGGTGGCTGACAGATCAAACAGCAAGCTAGTGTATCTGAATCTCTGTTCACAGGAGCTCTCTCACCGCTCAAATAACAGAAAATCCAATGGAGCAACAGATATAACTCCGCAGGTCTCATCAGCAGTCCCAACTGATAGATCAGAACACAATACTGAAGATGATCTTTCAACTGACTCTGCAGTTCAAATAGCCCTTAAAAATGCTGGTCTTTCGTCTGATTCTCCTCCTGGTAGTCCAAGTGAGAAAAGAGAAATATCCAATAGCGAAGATGATCTTTCAGGGCCTGATAATATTCTTGAACTGGATTCTCAAACAGATACGGATATTTATGGGGACTTTGAGTATGATTTGGAAGATGAAGATTACATCGGTGCAGGCGTTGCTAGAGGCTTAAATTCACAAGAAGAAGAAAGCGAGTCAAAAATGAAACTAATTTTCTCAACTATGAAGAGTTCAGATACGGCTTTGGATTGTATGGGCTCTGAGAGGTTGGAAAACAAGGAAGTTCCACGAGATGCCCCCTGCTCATCAGATCATGATGATGCAGGCAACAGGGACTCTGCAATTAATGCAGAGACTGGCGATCCTTCGGCTCCTTCCGAGGCCTTTCTCAGGGAGCCATGTGATGTAGAATGCGAGGAATTATATGGTCCAGAGAAAGAACCCCTGACAAAAAAATTTCCGAACGAGGAATTTTTAACATTACATGGAGAGGACAAGTCAGGAACGTCCTCTGAAGGCAATGACTGTCATAATGAAGAACAAGCATCAGACCAAGCAGTCAATGCATCTGTGTCTGGGAATGACAAACTTGCGAAGAATATGTGGGCGACTGCTATGACTGACAATTCATCTAATGTATCTGATAATAGTGAAAATTTACGGAGGAAGGGGGATAAATCTGACACTGCTGCTGAGCAGTCTGGCTCTGCAAATCATATAGTTAGAAAGGTTGAAGCTTATGTCAAGGAGCATGTCAGGCCACTGTGCAAGAGTGGTGTGATCACAGCTGAACAGTACAGGTGGGCTGTTGTAAAAACGGCGGAAAAGGTTATGAAGTACCATTGCAAAGCCAAGAATGCCAATTTCCTTATAAAGGAAGGTGAGAAAGTGAAGAAACTCGCAGAACAGTATGTTGAAGCTGCCCAACATAACAGAAAAAATTGA 3873 0.4152 MEADFVSSGMLIEEPSEADDNANTDNLFIDGERCGICMDIVIDRGVLDCCQHWFCFACIDNWATITNLCPLCQNEFQLITCVPVYDTIGSSKIEDDMLSRDDDWSIEGKNNTLSFPSYYIDENAVICLDGDGCKIRSGSATIEGDLSLDTSIACDSCDIWYHAFCVGFDPDGTSDITWLCPRCVPDKVTENMDASSLEKTATEINLENGNKECQAKESFSRKVSVSVADAGETAVVVSLVDGNQWIPASSGKGLSPLEASKNPMTESCVSVSDANNHQSNTEETINSPTEQQELELSLSHNVVCSLPSNTLGLDDLKKGTYEEISDPSCLSGTKILNESHDSASTSRSDMGLHLGLSVGSFLCDMNATIDQETDLQQSSSEEFTLKGDEMEQNALMDNARVMDGKRKHADYSHDEVHIEVDGDAELKPEVEVLQKKLKTDGTLLINHKNLAGAPLSDDTKTNPSTKPVSRHDDGKHHSTKENAASDIMSIVKGTKWKPPKGTPGIKSCDKLSENNENIVGLRVKKIMKRAPDHEESSLVQNLREEIREAVRNKSSKNFEANLVDTKLLAAFRAAVAGPKPEPVNKLPTMALKAKKSMLRKGKVREHLTRKIFGASNGRRKRAWDRDCEIEFWKYRCMRASKPEKIETLKSVLDLLRKSSGSAEAKEDPDGQAKNSILSRLYLADTSVFPRNNDVRPLSALETAANSEQNKKPNLSGKASNQSLDNSLVKAKEINKVFPKARDCSSENKANKKVVHSSVGGNSASGKVPSSRQSEGATGSYSGGSRVDLKESCIKSDCIKSDKRKWALEVLARKAASAGKKMTNDGHEDNAMLKGNYPLLAQLPADMRPVLAPSRHNKIPISVRQTQLLRLTELFLRNANLSVIRRTADTELAVADAINIEKEVADRSNSKLVYLNLCSQELSHRSNNRKSNGATDITPQVSSAVPTDRSEHNTEDDLSTDSAVQIALKNAGLSSDSPPGSPSEKREISNSEDDLSGPDNILELDSQTDTDIYGDFEYDLEDEDYIGAGVARGLNSQEEESESKMKLIFSTMKSSDTALDCMGSERLENKEVPRDAPCSSDHDDAGNRDSAINAETGDPSAPSEAFLREPCDVECEELYGPEKEPLTKKFPNEEFLTLHGEDKSGTSSEGNDCHNEEQASDQAVNASVSGNDKLAKNMWATAMTDNSSNVSDNSENLRRKGDKSDTAAEQSGSANHIVRKVEAYVKEHVRPLCKSGVITAEQYRWAVVKTAEKVMKYHCKAKNANFLIKEGEKVKKLAEQYVEAAQHNRKN 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1219 1290 MobiDBLite consensus disorder prediction 1181 1213 - -
Prci10g1219 1290 MobiDBLite consensus disorder prediction 958 984 - -
Prci10g1219 1290 MobiDBLite consensus disorder prediction 740 785 - -
Prci10g1219 1290 PANTHER RING FINGER PROTEIN 41, 151 115 1281 - -
Prci10g1219 1290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 110 IPR013083 -
Prci10g1219 1290 SUPERFAMILY FYVE/PHD zinc finger 149 188 IPR011011 -
Prci10g1219 1290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 191 IPR013083 -
Prci10g1219 1290 MobiDBLite consensus disorder prediction 1069 1088 - -
Prci10g1219 1290 Pfam Ring finger domain 33 73 IPR001841 -
Prci10g1219 1290 MobiDBLite consensus disorder prediction 750 780 - -
Prci10g1219 1290 Coils Coil 539 559 - -
Prci10g1219 1290 MobiDBLite consensus disorder prediction 452 509 - -
Prci10g1219 1290 MobiDBLite consensus disorder prediction 923 1008 - -
Prci10g1219 1290 MobiDBLite consensus disorder prediction 1069 1104 - -
Prci10g1219 1290 MobiDBLite consensus disorder prediction 923 947 - -
Prci10g1219 1290 Pfam PHD-finger 149 185 IPR019787 -
Prci10g1219 1290 ProSiteProfiles Zinc finger PHD-type profile. 66 186 IPR019787 -
Prci10g1219 1290 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Prci10g1219 1290 SMART ring_2 34 72 IPR001841 -
Prci10g1219 1290 SMART ring_2 124 183 IPR001841 -
Prci10g1219 1290 ProSiteProfiles Zinc finger RING-type profile. 34 73 IPR001841 -
Prci10g1219 1290 MobiDBLite consensus disorder prediction 464 482 - -
Prci10g1219 1290 MobiDBLite consensus disorder prediction 1138 1165 - -
Prci10g1219 1290 SUPERFAMILY RING/U-box 25 79 - -
Prci10g1219 1290 MobiDBLite consensus disorder prediction 1138 1155 - -
Prci10g1219 1290 MobiDBLite consensus disorder prediction 704 723 - -
Prci10g1219 1290 SMART PHD_3 132 184 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1219 Prci-Chr10 8060376 8076924 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1219 11 85 C3H Transcription Factor Family AT3G58030 29.870 8.79e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci10g1219 PHD 5.3e-08 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g1219 10 8060376 8076924 Prci10g1219 10 8060376 8076924 ECH