Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1196 ATGACTACCTTATTAGCCTCATCTCTGTCATTATTATTATTGCTGATAATCCAGTGCGTTAGTGGGGCTCATGAAGTGGAGGCTTGCACTAGCATGTCTTGTGGTGGAATCGAGATCAAGTTCCCTTTCGGTTTAAAGGGACACAATCAGAGTCGTCGATGTAGCTACCCCAGGTTCCTCGTTTCCTGCAACAATCAGAGCCAGACCATCTTCACGCTACCAGAATCAGGAGACTTAGTGATCAAAGGAATCGATTACGCTTCCCAAATCCTCTGGGTTAACGATCCCAATCAATGCCTTCCCAGACGGTTCTTGAAGGGTCTCACTCTTTCTAGCTCGCCTTTCCAGTTCGATCCTGGTCTTTACAATCGCATCAACCTCACTTTCCTTCGCTGCCCTTCCAACTTAACAGAGACTTCCCCACTCACTCCGGTTCGTTGTCTTAACGATCTTGCCAATTCCTCCTTCGCTGTTACGTATTTGTGGATGCGATCCATTCCTTCGCTCTTGAATGAATCGTGCGAGGTCATTAATTCTTCTGTCCCCTATCCGATTTCGAACATCGACCCGTGGCCTTTCTGGGTCGACATCGGCGATGATATACAGTTGACGTGGGGCAGGCCGAGTTGTGGTGGCTGTGAAGCTCAAGGACAAGATTGTGGGTTCTCAAAAGACACGGGTCTACAAACAGGATGCTTCTCTCGTTCCCAGGAAAGCTCAGGTCTTCCAAGGGGTGTCAAGTATGGGCTAACAATAGGAGTGGGAATACCTGGATTCTTGTGTTTGATTGGGCTAGGTTGTTTCATGTGTGGCAAGATACGACGTCGTCGCAATCCCAGGCCCAGCATAGACCTTCCCATCTCATCATTTATGGTCCAGTCGAGCCCATTTGGAACGGGCCTGGATGGGTCCACAATAGAAAAGTATCCCATGACTCTTCTTGGCGAGAGCAGGCGGCTACCCAAGCCCAGCGATAATATTTGCTCCATATGCCTGTCGGAGTATGAGCCCAAGGAGACCTTGAGAACCATACCCGATTGCAACCATTATTTCCATGCACACTGTATAGATGAATGGCTCAAGATGAATGCCACGTGTCCCGTTTGCCGGAATTCTCCCACGCACACACCTTCTTCTATCTCAACTTCATCATCTATGTCTCCTTCTTCTTCCTTATCCTCTTCACACTAG 1191 0.4853 MTTLLASSLSLLLLLIIQCVSGAHEVEACTSMSCGGIEIKFPFGLKGHNQSRRCSYPRFLVSCNNQSQTIFTLPESGDLVIKGIDYASQILWVNDPNQCLPRRFLKGLTLSSSPFQFDPGLYNRINLTFLRCPSNLTETSPLTPVRCLNDLANSSFAVTYLWMRSIPSLLNESCEVINSSVPYPISNIDPWPFWVDIGDDIQLTWGRPSCGGCEAQGQDCGFSKDTGLQTGCFSRSQESSGLPRGVKYGLTIGVGIPGFLCLIGLGCFMCGKIRRRRNPRPSIDLPISSFMVQSSPFGTGLDGSTIEKYPMTLLGESRRLPKPSDNICSICLSEYEPKETLRTIPDCNHYFHAHCIDEWLKMNATCPVCRNSPTHTPSSISTSSSMSPSSSLSSSH 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1196 396 CDD RING-H2_EL5-like 327 370 - -
Prci10g1196 396 SMART ring_2 328 369 IPR001841 -
Prci10g1196 396 SUPERFAMILY RING/U-box 322 374 - -
Prci10g1196 396 ProSiteProfiles Zinc finger RING-type profile. 328 370 IPR001841 -
Prci10g1196 396 MobiDBLite consensus disorder prediction 374 396 - -
Prci10g1196 396 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 373 IPR046948 -
Prci10g1196 396 Pfam Wall-associated receptor kinase galacturonan-binding 29 95 IPR025287 GO:0030247
Prci10g1196 396 Pfam Ring finger domain 327 370 IPR001841 -
Prci10g1196 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 374 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1196 Prci-Chr10 7968904 7974565 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1196 23 374 C3H Transcription Factor Family AT2G25410 36.461 7.44e-57 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1196 - - gmx:100810240 375.555